6o8e_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF UVRB BOUND TO DUPLEX DNA WITH ADP (UvrABC system protein B)
reference	Verdine et al. Res 2019 5641746 2019
source	Bacillus caldotenax
experiment	X-ray (resolution=2.61, R-factor=0.217)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
sequence family	Helicase conserved Cterminal domain; Type III restriction enzyme, res subunit;
reference complex	6o8h_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6o8e_A interface=90,92,94,95,96,97,108,111,113,114,145,248,250,301,305,306,309,345,349,356,526, egrfqlvapyepqgdqpqaiaklvdglrrgvkhqtllgatgtgktftisnviaqvnkptlviahnktlagqlyselkeffphnaveyfvSyYdYYQPeayvpqtdtyIekDaKIndeidklrhsatsalferrdviivasvssiYglgspeeyrelvvslrvgmeiernallrrlvdiqydrndidfrrgtfrvrgdvveifpasrdehsirveffgdeierirevdaltgevlgerehvaifpashFvCreekmrlaiqnieqeleerlaelraqgklleaqrleqrtrydlemmremgFssgIEnySrhlalrppgstpytlldyfpddfliivdeshvtlpQlrgMyngdraRkqvlvdhgfrlpsaldnrpltfeefeqkinqiiyvsatpgpyelehspgvveqiirptglldptidvrptkgqiddligeirervernertlvttltkkmaedltdylkeagikvaylhseiktlerieiirdlrlgkydvlvginllregldipevslvaildadkegFlrsersliqtigraarnanghvimyadtitksmeiaiqetkrrraiqeeynrkhgivprtvkkeir
interface signature	SYYYQPIDKIYFCFIESQMRF

Estimated binding specificities ?

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# IC=6.721 IC/col=0.747 n_of_columns=9

specificity:

A |   8   0   0   0  96  38  24  12   8
C |   8   0  96  96   0  19  24  60  10
G |   8  96   0   0   0  20  24  12   8
T |  72   0   0   0   0  19  24  12  70

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updated Fri Jan 9 08:53:05 2026