6o8e_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF UVRB BOUND TO DUPLEX DNA WITH ADP (UvrABC system protein B)
reference	Verdine et al. Res 2019 5641746 2019
source	Bacillus caldotenax
experiment	X-ray (resolution=2.61, R-factor=0.217)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
sequence family	Helicase conserved Cterminal domain; Type III restriction enzyme, res subunit;
reference complex	6o8h_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6o8e_A interface=90,92,94,95,96,97,108,111,113,114,145,248,250,301,305,306,309,345,349,356,526, egrfqlvapyepqgdqpqaiaklvdglrrgvkhqtllgatgtgktftisnviaqvnkptlviahnktlagqlyselkeffphnaveyfvSyYdYYQPeayvpqtdtyIekDaKIndeidklrhsatsalferrdviivasvssiYglgspeeyrelvvslrvgmeiernallrrlvdiqydrndidfrrgtfrvrgdvveifpasrdehsirveffgdeierirevdaltgevlgerehvaifpashFvCreekmrlaiqnieqeleerlaelraqgklleaqrleqrtrydlemmremgFssgIEnySrhlalrppgstpytlldyfpddfliivdeshvtlpQlrgMyngdraRkqvlvdhgfrlpsaldnrpltfeefeqkinqiiyvsatpgpyelehspgvveqiirptglldptidvrptkgqiddligeirervernertlvttltkkmaedltdylkeagikvaylhseiktlerieiirdlrlgkydvlvginllregldipevslvaildadkegFlrsersliqtigraarnanghvimyadtitksmeiaiqetkrrraiqeeynrkhgivprtvkkeir
interface signature	SYYYQPIDKIYFCFIESQMRF

Estimated binding specificities ?

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# IC=6.679 IC/col=0.742 n_of_columns=9

specificity:

A |  70  12  24  19   0   0   0   0  70
C |   8  12  24  19   0   0   0  96  10
G |   8  60  24  20   0   0   0   0   8
T |  10  12  24  38  96  96  96   0   8

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updated Mon Dec 18 17:08:58 2023