6o8f_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF UVRB BOUND TO DUPLEX DNA (UvrABC system protein B)
reference	Verdine et al. Res 2019 5641746 2019
source	Bacillus caldotenax
experiment	X-ray (resolution=2.81, R-factor=0.222)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;
sequence family	Helicase conserved Cterminal domain; Type III restriction enzyme, res subunit;
reference complex	6o8h_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6o8f_A interface=89,91,93,94,95,96,107,110,112,113,144,247,249,300,304,305,308,344,348,355,478,525, grfqlvapyepqgdqpqaiaklvdglrrgvkhqtllgatgtgktftisnviaqvnkptlviahnktlagqlyselkeffphnaveyfvSyYdYYQPeayvpqtdtyIekDaKIndeidklrhsatsalferrdviivasvssiYglgspeeyrelvvslrvgmeiernallrrlvdiqydrndidfrrgtfrvrgdvveifpasrdehsirveffgdeierirevdaltgevlgerehvaifpashFvCreekmrlaiqnieqeleerlaelraqgklleaqrleqrtrydlemmremgFssgIEnySrhlalrppgstpytlldyfpddfliivdeshvtlpQlrgMyngdraRkqvlvdhgfrlpsaldnrpltfeefeqkinqiiyvsatpgpyelehspgvveqiirptglldptidvrptkgqiddligeirervernertlvttltkkmaedltdylkeagikvaylhseiKtlerieiirdlrlgkydvlvginllregldipevslvaildadkegFlrsersliqtigraarnanghvimyadtitksmeiaiqetkrrraiqeeynrkhgivprtvkkeir
interface signature	SYYYQPIDKIYFCFIESQMRKF

Estimated binding specificities ?

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# IC=6.763 IC/col=0.751 n_of_columns=9

specificity:

A |   0   0   0   0  96  38  24  24  19
C |   0   0  96  96   0  19  24  24  19
G |   0  96   0   0   0  19  24  24  20
T |  96   0   0   0   0  20  24  24  38

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updated Fri Jan 9 08:53:32 2026