6on0_B : 3D-footprint complex

structure name	STRUCTURE OF N15 CRO COMPLEXED WITH CONSENSUS OPERATOR DNA (GP39)
reference	Cordes et al. 'Nucleic 47 7118 2019
source	ESCHERICHIA PHAGE N15
experiment	X-ray (resolution=1.60, R-factor=0.206)
structural superfamily	lambda repressor-like DNA-binding domains;
multimeric complexes	6on0_AB
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6on0_B interface=23,26,28,29,32, mkpeelvrhfgdvekaavgvgvTpgAvYQwlQageipplrqsdievrtayklksdftsqrmgk
interface signature	TAYQQ

Estimated binding specificities ?

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# IC=1.523 IC/col=0.305 n_of_columns=5

specificity:

A |  12  20   7  74  21
C |  12  24   9   7  21
G |  12  27   7   7  39
T |  60  25  73   8  15

scan!

Dendrogram of similar interfaces ?

matrix format

  
  QT--TTQAQGSTECQTKCRA   L     +-----------------------------1per_L    
                               ! 
  --RTTT--AT--STRGTT--   L     !                           +-6chv_D    
                               !                     +-----1 
  --ATSTATPT--NT--RC--       +-6                     !     +-6jpi_C    
                             ! !                +----3 
  --ETDTRGTCYTST------   L   ! !                !    ! +-----3s8q_A    
                             ! !                !    +-2 
  --STKCQAAT--SA------   L   ! +----------------5      +-----3dnv_B    
                           --7                  ! 
  ----SCQCAGRCSCKT----   L   !                  !   +--------6lty_B    
                             !                  +---4 
  --ET--QASG------NG--   L   !                      +--------1lmb_4    
                             ! 
  ------QASTCTSARTET--   L   +-----------------------------5j2y_A

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updated Tue Jun 30 00:14:25 2026