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legend  pdf

structure nameESCHERICHIA COLI RNA POLYMERASE PROMOTER UNWINDING INTERMEDIATE (TRPI1.5A) WITH TRAR AND MUTANT RPST P2 PROMOTER
sourceESCHERICHIA COLI
experimentNMR
structural superfamilyInsert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex3iyd_A 7c97_K 8y6u_I
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signature/ERYKTYWRQRHELTRERRQ/R

Estimated binding specificities ?

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# IC=15.248 IC/col=0.586 n_of_columns=26 specificity:   
A |   0   0   0  96   0  96  24  24  24  24  24  24  24  24  24  24  24  24  76  64  12   8   0   0  96   0
C |   0   0   0   0  96   0  24  24  24  24  24  24  24  24  24  24  24  24   6   6  12   6   0  96   0   0
G |   0   0  96   0   0   0  24  24  24  24  24  24  24  24  24  24  24  24   6  12  57  76  96   0   0   0
T |  96  96   0   0   0   0  24  24  24  24  24  24  24  24  24  24  24  24   8  14  15   6   0   0   0  96
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updated Sat Dec 14 18:19:33 2024