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legend  pdf

structure nameESCHERICHIA COLI RNA POLYMERASE PROMOTER UNWINDING INTERMEDIATE (TRPI1.5A) WITH TRAR AND MUTANT RPST P2 PROMOTER
sourceESCHERICHIA COLI
experimentNMR
structural superfamilyInsert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex3iyd_A 6psq_M 7c97_K 8y6u_I
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signature/ERYKTYWRQRHELTRERRQ/R

Estimated binding specificities ?

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# IC=15.569 IC/col=0.599 n_of_columns=26 specificity:   
A |   0   0   0   0   6  14  12   8  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0   0  96  96
C |   0  96   0  96  76  70   8   6  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0  96   0   0
G |  96   0  96   0   8  12  12   6  24  24  24  24  24  24  24  24  24  24  24  24   0  96   0   0   0   0
T |   0   0   0   0   6   0  64  76  24  24  24  24  24  24  24  24  24  24  24  24  96   0  96   0   0   0
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updated Wed Jul 30 23:49:48 2025