6pst_ILM : 3D-footprint complex

structure name	ESCHERICHIA COLI RNA POLYMERASE PROMOTER UNWINDING INTERMEDIATE (TRPI1.5B) WITH TRAR AND MUTANT RPST P2 PROMOTER
source	ESCHERICHIA COLI
experiment	NMR
structural superfamily	Insert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex	3iyd_A 7c97_K 8y6u_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6pst_I interface=374,465,466,469,488,489,492,493, vysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqsysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeqevymgeiplmtdngtfvingtervivsqlhrspgvffdsdkgkthssgkvlynariipyrgswldfefdpkdnlfvridrrrklpatiilralnytteqildlffekvifeiklqmelvperlrgtasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdyidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrlsalveiyrmmrpgepptrEaaeslfenlffsedrydlsavgrmkfnrsllreeiegsgilskddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvRVerAvkerlslgdldtlmpqdmINakPIsaavkeffgssqlsqfmdqnnplseithkrrisalgpggltreragfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvtdeihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvvsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakrggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergdvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsrdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeekllraifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdlseelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqydelkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskinpiedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevaklrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellklgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplggkaqfggqrfgemevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmpesfnvllkeirslginielede > 6pst_L interface=337,340,341,342,364,365,368,370,374,375,378,379,382,386,400,403,406,413,529,530,531,533,534, sqlkllvtrgkeqgyltyaevndhlpedivdsdqiediiqmindmgiqvmeeapdaddlmlaentadedaaeaaaqvlssveseigrttdpvrmymremgtvelltregeidiakriedginqvqcsvaeypeaitylleqydrveaeearlsdlitgfvdidpelarekfaelraqyvvtrdtikhataqeeilklsevfkqfrlvpkqfdylvnsmrvmmdrvrtqerlimklcveqckmpkknfitlftgnetsdtwfnaaiamnkpwseklhdvseevhralqklqqieeetgltieqvkdinrrmsigeakarrakkemveanlrlvisiaKkyTNRglqfldliqegniglmkavdkFEyrRgYkfsTYatWWirQaitRsiadqartiripvHmiEtiNklnrisRqmlqemgreptpeelaermlmpedkirkvlkiakepismetpigddedshlgdfiedttlelpldsatteslraathdvlagltareakvlrmrfgidmntdytleevgkqfdvtRERiRQieakalrklrhpsrsevlrsfldd > 6pst_M interface=16, dpillrpvddleltvRsanclkaeaihyigdlvqrtevellktpnlgkkslteikdvlasrglslgmrlenwp
interface signature	ERVAINPI/KTNRFERYTYWWQRHENRRERRQ/R

Estimated binding specificities ?

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# IC=16.497 IC/col=0.550 n_of_columns=30

specificity:

A |   5  96   0   0   0   0   0   6  24  24   5  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0  81  80   5
C |   5   0   0   0  96   0  96  80  24  24   5  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0  96   5   6   5
G |  81   0   0  96   0  96   0   5  24  24   5  24  24  24  24  24  24  24  24  24  24  24  24  24  96   0   0   5   5   6
T |   5   0  96   0   0   0   0   5  24  24  81  24  24  24  24  24  24  24  24  24  24  24  24  24   0  96   0   5   5  80

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updated Sat Dec 14 18:21:23 2024