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structure nameESCHERICHIA COLI RNA POLYMERASE PROMOTER UNWINDING INTERMEDIATE (TRPI2) WITH TRAR AND RPST P2 PROMOTER
sourceESCHERICHIA COLI
experimentNMR
structural superfamilyInsert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex3iyd_A 6psq_M 7c97_K 8y6u_I
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signature//WRQRHRERRQ/R

Estimated binding specificities ?

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# IC=9.337 IC/col=0.322 n_of_columns=29 specificity:   
A |   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0   0  96  69   9   9  24  24   0
C |   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   0  96   0   9   9  11  24  24   0
G |  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  96   0   0   0   9  11  67  24  24   0
T |   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0  96   0   0   9  67   9  24  24  96
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updated Tue Sep 10 18:48:39 2024