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legend  pdf

structure nameESCHERICHIA COLI RNA POLYMERASE PROMOTER UNWINDING INTERMEDIATE (TPRERPO) WITH TRAR AND RPST P2 PROMOTER
sourceESCHERICHIA COLI
experimentNMR
structural superfamilyInsert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex3iyd_A 6psq_M 7c97_K 8y6u_I
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRPR/LLY/VRMMLNRLNRFERYKSTYTWRQRVHERLETRERRQ/R

Estimated binding specificities ?

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# IC=19.499 IC/col=0.574 n_of_columns=34 specificity:   
A |   0  24   9  96  96  96   0  75   0   0   0  24  24  24   6  24  24  24  24  24  24  24  24  24  24  24  24  24   9   0   0  96  96   1
C |   0  24  75   0   0   0   0   6   0   0  96  24  24  24   9  24  24  24  24  24  24  24  24  24  24  24  24  24   6   0  96   0   0   6
G |   0  24   6   0   0   0   0   6   0  96   0  24  24  24   6  24  24  24  24  24  24  24  24  24  24  24  24  24  75   0   0   0   0   0
T |  96  24   6   0   0   0  96   9  96   0   0  24  24  24  75  24  24  24  24  24  24  24  24  24  24  24  24  24   6  96   0   0   0  89
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updated Wed Jul 30 23:59:04 2025