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legend  pdf

structure nameESCHERICHIA COLI RNA POLYMERASE PROMOTER UNWINDING INTERMEDIATE (TPRERPO) WITH TRAR AND RPST P2 PROMOTER
sourceESCHERICHIA COLI
experimentNMR
structural superfamilyInsert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex3iyd_A 6psq_M 7c97_K 8y6u_I
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRPR/LLY/VRMMLNRLNRFERYKSTYTWRQRVHERLETRERRQ/R

Estimated binding specificities ?

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# IC=19.390 IC/col=0.570 n_of_columns=34 specificity:   
A |  89   0   0   0  96   6  24  24  24  24  24  24  24  24  24  24  24  24  24  76  24  24  24   0   0  96   8  96   0   0   0   8  24   0
C |   0   0   0   0   0  78  24  24  24  24  24  24  24  24  24  24  24  24  24   6  24  24  24   6  96   0   6   0   0   0  96  76  24   0
G |   7   0   0  96   0   6  24  24  24  24  24  24  24  24  24  24  24  24  24   6  24  24  24  89   0   0   6   0   0   0   0   6  24   0
T |   0  96  96   0   0   6  24  24  24  24  24  24  24  24  24  24  24  24  24   8  24  24  24   1   0   0  76   0  96  96   0   6  24  96
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updated Tue Sep 10 18:53:39 2024