6pw2_IKL : 3D-footprint complex

structure name	STRUCTURAL BASIS FOR COOPERATIVE BINDING OF EBNA1 TO THE EPSTEIN-BARR VIRUS DYAD SYMMETRY MINIMAL ORIGIN OF REPLICATION
reference	Lieberman et al. J.Virol. 93 ? 2019
source	Epstein-Barr virus (strain B95-8) / Epstein-Barr virus (strain B95-8) / Epstein-Barr virus (strain B95-8) / Epstein-Barr virus (strain B95-8) / Epstein-Barr virus (strain B95-8) / Epstein-Barr virus (strain B95-8)
experiment	X-ray (resolution=3.01, R-factor=?)
structural superfamily	Viral DNA-binding domain;
reference complex	7u1t_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6pw2_I interface=1,4,5,9,15,17,54,55,58,59, KggWFgkhRgqggsNpKfeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrrgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlp > 6pw2_K interface=1,4,5,17,54,55,58,59, KggWFgkhrgqggsnpKfeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrrgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlp > 6pw2_L interface=1,4,5,9,17,54,55,58,59, KggWFgkhRgqggsnpKfeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrrgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlp
interface signature	KWFRNKKTYN/KWFKKTYN/KWFRKKTYN

Estimated binding specificities ?

readout + contact

# IC=24.867 IC/col=0.921 n_of_columns=27

specificity:

A |  90  90   0  94   1   9  94   0  24   9  24   3  11  96   0   0  11  24  24  24   7   0   0  96  93   2   0
C |   1   1   0   0   0  69   0   0  24  13  24   0   0   0  96  96  84  24  24  24   3   0   0   0   1   0  96
G |   4   1   0   0  94   7   1   0  24   9  24   1   1   0   0   0   0  24  24  24  78  96  96   0   1  94   0
T |   1   4  96   2   1  11   1  96  24  65  24  92  84   0   0   0   1  24  24  24   8   0   0   0   1   0   0

scan!

home
updated Sat Dec 14 18:38:29 2024