6pw2_IKL : 3D-footprint complex

structure name	STRUCTURAL BASIS FOR COOPERATIVE BINDING OF EBNA1 TO THE EPSTEIN-BARR VIRUS DYAD SYMMETRY MINIMAL ORIGIN OF REPLICATION
reference	Lieberman et al. J.Virol. 93 ? 2019
source	Epstein-Barr virus (strain B95-8) / Epstein-Barr virus (strain B95-8) / Epstein-Barr virus (strain B95-8) / Epstein-Barr virus (strain B95-8) / Epstein-Barr virus (strain B95-8) / Epstein-Barr virus (strain B95-8)
experiment	X-ray (resolution=3.01, R-factor=?)
structural superfamily	Viral DNA-binding domain;
reference complex	7u1t_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6pw2_I interface=1,4,5,9,15,17,54,55,58,59, KggWFgkhRgqggsNpKfeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrrgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlp > 6pw2_K interface=1,4,5,17,54,55,58,59, KggWFgkhrgqggsnpKfeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrrgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlp > 6pw2_L interface=1,4,5,9,17,54,55,58,59, KggWFgkhRgqggsnpKfeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrrgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlp
interface signature	KWFRNKKTYN/KWFKKTYN/KWFRKKTYN

Estimated binding specificities ?

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# IC=25.943 IC/col=0.961 n_of_columns=27

specificity:

A |   0   0   0   0   0   0   9  24  24  24   1   0   0   0  80  96   7  69  24  96   1  13   1   1  96   0   1
C |   0  96   0   0  96  96  71  24  24  24   1   0   0   0   1   0  77   5  24   0   1   7  94   3   0   0   0
G |  96   0   0   0   0   0   5  24  24  24  90  96  96   0   4   0  11   9  24   0   1  65   0   4   0   0   1
T |   0   0  96  96   0   0  11  24  24  24   4   0   0  96  11   0   1  13  24   0  93  11   1  88   0  96  94

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updated Thu Jul 31 00:07:56 2025