6pw2_IKL : 3D-footprint complex

structure name	STRUCTURAL BASIS FOR COOPERATIVE BINDING OF EBNA1 TO THE EPSTEIN-BARR VIRUS DYAD SYMMETRY MINIMAL ORIGIN OF REPLICATION
reference	Lieberman et al. J.Virol. 93 ? 2019
source	Epstein-Barr virus (strain B95-8) / Epstein-Barr virus (strain B95-8) / Epstein-Barr virus (strain B95-8) / Epstein-Barr virus (strain B95-8) / Epstein-Barr virus (strain B95-8) / Epstein-Barr virus (strain B95-8)
experiment	X-ray (resolution=3.01, R-factor=?)
structural superfamily	Viral DNA-binding domain;
reference complex	7u1t_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6pw2_I interface=1,4,5,9,15,17,54,55,58,59, KggWFgkhRgqggsNpKfeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrrgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlp > 6pw2_K interface=1,4,5,17,54,55,58,59, KggWFgkhrgqggsnpKfeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrrgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlp > 6pw2_L interface=1,4,5,9,17,54,55,58,59, KggWFgkhRgqggsnpKfeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrrgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlp
interface signature	KWFRNKKTYN/KWFKKTYN/KWFRKKTYN

Estimated binding specificities ?

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# IC=24.635 IC/col=0.912 n_of_columns=27

specificity:

A |  90  90   0  90   1  11  90   0  24   7  24   1   7  96   0   0   7  24  24  24   7   0   0  96  90   1   0
C |   1   4   0   1   4  71   1   1  24   5  24   4   1   0  96  96  85  24  24  24   5   0   0   0   4   0  96
G |   1   1   0   4  90   7   4   0  24   7  24   1   1   0   0   0   1  24  24  24  84  96  96   0   1  94   0
T |   4   1  96   1   1   7   1  95  24  77  24  90  87   0   0   0   3  24  24  24   0   0   0   0   1   1   0

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updated Tue Jan 6 11:07:35 2026