6pw2_IKL : 3D-footprint complex

structure name	STRUCTURAL BASIS FOR COOPERATIVE BINDING OF EBNA1 TO THE EPSTEIN-BARR VIRUS DYAD SYMMETRY MINIMAL ORIGIN OF REPLICATION
reference	Lieberman et al. J.Virol. 93 ? 2019
source	Epstein-Barr virus (strain B95-8) / Epstein-Barr virus (strain B95-8) / Epstein-Barr virus (strain B95-8) / Epstein-Barr virus (strain B95-8) / Epstein-Barr virus (strain B95-8) / Epstein-Barr virus (strain B95-8)
experiment	X-ray (resolution=3.01, R-factor=?)
structural superfamily	Viral DNA-binding domain;
reference complex	7u1t_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6pw2_I interface=1,4,5,9,15,17,54,55,58,59, KggWFgkhRgqggsNpKfeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrrgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlp > 6pw2_K interface=1,4,5,17,54,55,58,59, KggWFgkhrgqggsnpKfeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrrgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlp > 6pw2_L interface=1,4,5,9,17,54,55,58,59, KggWFgkhRgqggsnpKfeniaeglrallarshverttdegtwvagvfvyggsKTslYNlrrgtalaipqcrltplsrlpfgmapgpgpqpgplresivcyfmvflqthifaevlkdaikdlvmtkpaptcnirvtvcsfddgvdlp
interface signature	KWFRNKKTYN/KWFKKTYN/KWFRKKTYN

Estimated binding specificities ?

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# IC=25.138 IC/col=0.931 n_of_columns=27

specificity:

A |  90  92   0  90   4  11  90   0  24  13  24   0  13  96   0   0  12  24  24  24   1   0   0  96  94   0   0
C |   4   1   0   1   1  63   4   1  24   7  24   0   0   0  96  96  82  24  24  24   1   0   0   0   1   0  96
G |   1   1   0   4  90   9   1   0  24   4  24   0   1   0   0   0   1  24  24  24  93  96  96   0   0  96   0
T |   1   2  96   1   1  13   1  95  24  72  24  96  82   0   0   0   1  24  24  24   1   0   0   0   1   0   0

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updated Tue Sep 10 19:01:35 2024