6px1_C : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	SET2 BOUND TO NUCLEOSOME
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	6nzo_ABCDEFGHS 6px1_ABCDEFGH 6px3_ABCDEFGHS
redundant complexes	6nzo_C 6px3_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6px1_C interface=27, grssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk

  
  --RG----       +-----------------------------5x0y_G    
                 !  
  --RG----       !                             +8txv_G    
                 !              +--------------1 
  --RG----     -10     +--------5              +8ox0_C    
                 !     !        ! 
  --RA--RA       !     !        +--------------6a5l_g    
                 !     ! 
  --RT----       !     !                        +8u14_G    
                 +-----9                      +-2 
  --RA----             !     +----------------3 +1zla_C    
                       !     !                ! 
  --RG----             ! +---6                +8jla_C    
                       ! !   ! 
  LCRT----             ! !   +-----------------8hr1_E    
                       +-8 
  --RG--RG               !              +------8kcb_A    
                         !  +-----------4 
  ----RA--               +--7           +------6g0l_D    
                            ! 
  --RT----                  +------------------8grq_A

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updated Wed Dec 18 05:08:31 2024