6px1_C : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	SET2 BOUND TO NUCLEOSOME
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	6nzo_ABCDEFGHS 6px1_ABCDEFGH 6px3_ABCDEFGHS
redundant complexes	6nzo_C 6px3_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6px1_C interface=27, grssraglqfpvgrvhrllrkgnyaeRvgagapvylaavleyltaeilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk

  
  ------RT                   +-----------------------------7lyb_G    
                           +-1 
  ------RA               +-2 +-----------------------------6t7a_C    
                         ! ! 
  ------RT             +-3 +-----------------------------1u35_G    
                       ! ! 
  RAETRT--           +-4 +-----------------------------4ne1_p    
                     ! ! 
  ------RT         +-5 +-----------------------------7wlr_E    
                   ! ! 
  ------RT       +-6 +-----------------------------7zs9_e    
                 ! ! 
  ------RT     --7 +-----------------------------7lya_E    
                 ! 
  --IT--RA       +-----------------------------7k78_E

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updated Fri Sep 13 23:06:47 2024