6q2b_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PUTATIVE MARR FAMILY TRANSCRIPTIONAL REGULATOR FROM LISTERIA MONOCYTOGENES COMPLEXED WITH 26MER DNA
reference	Midwest Center for Structural Genomics (MCSG)
source	Listeria monocytogenes
experiment	X-ray (resolution=2.72, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	6q2b_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6q2b_A interface=48,58,59,60,63,84, mkdilrdigviaraldsisniefkelnlakgqfiylvricenqgiiqEklvdilkidRTTasRaiknlekngliikkqnknnkKnkllfptekgqqlypliireneysnavalkgfteaeinmltdalkkvkeniaddwlyvkkgnkrsy > 6q2b_B interface=48,58,59,60,62,63,84, mkdilrdigviaraldsisniefkelnlakgqfiylvricenqgiiqEklvdilkidRTTaSRaiknlekngliikkqnknnkKnkllfptekgqqlypliireneysnavalkgfteaeinmltdalkkvkeniaddwlyvkkgnkrsy
interface signature	ERTTRK/ERTTSRK

Estimated binding specificities ?

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# IC=16.551 IC/col=0.828 n_of_columns=20

specificity:

A |  96   0   0  10   1   0  10   0  24  24  24  24   0   1  96  64  14  91  93   3
C |   0   0   0   2   4   0   0  96  24  24  24  24   0  22   0   8  52   2   1   0
G |   0   0   0  68   8   0  86   0  24  24  24  24  96   0   0  12  14   0   0   0
T |   0  96  96  16  83  96   0   0  24  24  24  24   0  73   0  12  16   3   2  93

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updated Thu Jul 31 00:13:55 2025