6q2b_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PUTATIVE MARR FAMILY TRANSCRIPTIONAL REGULATOR FROM LISTERIA MONOCYTOGENES COMPLEXED WITH 26MER DNA
reference	Midwest Center for Structural Genomics (MCSG)
source	Listeria monocytogenes
experiment	X-ray (resolution=2.72, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	6q2b_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6q2b_A interface=48,58,59,60,63,84, mkdilrdigviaraldsisniefkelnlakgqfiylvricenqgiiqEklvdilkidRTTasRaiknlekngliikkqnknnkKnkllfptekgqqlypliireneysnavalkgfteaeinmltdalkkvkeniaddwlyvkkgnkrsy > 6q2b_B interface=48,58,59,60,62,63,84, mkdilrdigviaraldsisniefkelnlakgqfiylvricenqgiiqEklvdilkidRTTaSRaiknlekngliikkqnknnkKnkllfptekgqqlypliireneysnavalkgfteaeinmltdalkkvkeniaddwlyvkkgnkrsy
interface signature	ERTTRK/ERTTSRK

Estimated binding specificities ?

readout + contact

# IC=17.122 IC/col=0.856 n_of_columns=20

specificity:

A |  96   0   0  13   1   0   3   0  24  24  24  24   0   1  96  65   3  90  94   4
C |   0   0   1   1   1   0   0  96  24  24  24  24   0  34   0  15  59   1   0   1
G |   0   0   1  73   1   0  92   0  24  24  24  24  96   0   0   9   3   1   2   1
T |   0  96  94   9  93  96   1   0  24  24  24  24   0  61   0   7  31   4   0  90

scan!

home
updated Thu Jun 25 22:00:19 2026