6q2b_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF PUTATIVE MARR FAMILY TRANSCRIPTIONAL REGULATOR FROM LISTERIA MONOCYTOGENES COMPLEXED WITH 26MER DNA
reference	Midwest Center for Structural Genomics (MCSG)
source	Listeria monocytogenes
experiment	X-ray (resolution=2.72, R-factor=?)
structural superfamily	"Winged helix" DNA-binding domain;
reference complex	6q2b_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6q2b_A interface=48,58,59,60,63,84, mkdilrdigviaraldsisniefkelnlakgqfiylvricenqgiiqEklvdilkidRTTasRaiknlekngliikkqnknnkKnkllfptekgqqlypliireneysnavalkgfteaeinmltdalkkvkeniaddwlyvkkgnkrsy > 6q2b_B interface=48,58,59,60,62,63,84, mkdilrdigviaraldsisniefkelnlakgqfiylvricenqgiiqEklvdilkidRTTaSRaiknlekngliikkqnknnkKnkllfptekgqqlypliireneysnavalkgfteaeinmltdalkkvkeniaddwlyvkkgnkrsy
interface signature	ERTTRK/ERTTSRK

Estimated binding specificities ?

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# IC=16.838 IC/col=0.842 n_of_columns=20

specificity:

A |  88   0   0  17   3   0  79   0  24  24  24  24   0   0  96  86  17  94  96   0
C |   4   2   0  17  19   0   0  96  24  24  24  24   0  94   0   9  55   1   0   0
G |   3   0   0  57  13   0  17   0  24  24  24  24  96   0   0   0   9   0   0   0
T |   1  94  96   5  61  96   0   0  24  24  24  24   0   2   0   1  15   1   0  96

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updated Sat Dec 14 18:44:34 2024