6qem_ABCDEFGHIJKL : 3D-footprint complex

structure name	E. COLI DNABC COMPLEX BOUND TO SSDNA
source	ESCHERICHIA COLI
experiment	NMR
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6qem_A interface=335,368, lkvpphsieaeqsvlgglmldnerwddvaervvaddfytrphrhiftemarlqesgspidlitlaeslerqgqldsvggfaylaelskntpsaanisayadivreravvremisvaneiaeagfdpqgrtsedlldlaesrvfkiaesrankdegpkniadvldatvarieqlfqqphdgvtgvntgyddlnkktaglqpsdliivaarpsmgkttfamnlvenaamlqdkpvlifslempseqimmrslaslsrvdqtkirtgqlddedwarisgtmgillekrniyiddssgltptevrsrarriarehggiglimidylqlmrvpalsdnrTleiaeisrslkalakelnvpvvalsqlnrsleQradkrpvnsdlresgsieqdadlimfiyrdevyhensdlkgiaeiiigkqrngpigtvrltfngqwsrfdnyagpqy > 6qem_B interface=335, lkvpphsieaeqsvlgglmldnerwddvaervvaddfytrphrhiftemarlqesgspidlitlaeslerqgqldsvggfaylaelskntpsaanisayadivreravvremisvaneiaeagfdpqgrtsedlldlaesrvfkiaesrankdegpkniadvldatvarieqlfqqphdgvtgvntgyddlnkktaglqpsdliivaarpsmgkttfamnlvenaamlqdkpvlifslempseqimmrslaslsrvdqtkirtgqlddedwarisgtmgillekrniyiddssgltptevrsrarriarehggiglimidylqlmrvpalsdnrTleiaeisrslkalakelnvpvvalsqlnrsleqradkrpvnsdlresgsieqdadlimfiyrdevyhensdlkgiaeiiigkqrngpigtvrltfngqwsrfdnyagpqy > 6qem_C interface=333,335, lkvpphsieaeqsvlgglmldnerwddvaervvaddfytrphrhiftemarlqesgspidlitlaeslerqgqldsvggfaylaelskntpsaanisayadivreravvremisvaneiaeagfdpqgrtsedlldlaesrvfkiaesrankdegpkniadvldatvarieqlfqqphdgvtgvntgyddlnkktaglqpsdliivaarpsmgkttfamnlvenaamlqdkpvlifslempseqimmrslaslsrvdqtkirtgqlddedwarisgtmgillekrniyiddssgltptevrsrarriarehggiglimidylqlmrvpalsdNrTleiaeisrslkalakelnvpvvalsqlnrsleqradkrpvnsdlresgsieqdadlimfiyrdevyhensdlkgiaeiiigkqrngpigtvrltfngqwsrfdnyagpqy > 6qem_D interface=333,335, lkvpphsieaeqsvlgglmldnerwddvaervvaddfytrphrhiftemarlqesgspidlitlaeslerqgqldsvggfaylaelskntpsaanisayadivreravvremisvaneiaeagfdpqgrtsedlldlaesrvfkiaesrankdegpkniadvldatvarieqlfqqphdgvtgvntgyddlnkktaglqpsdliivaarpsmgkttfamnlvenaamlqdkpvlifslempseqimmrslaslsrvdqtkirtgqlddedwarisgtmgillekrniyiddssgltptevrsrarriarehggiglimidylqlmrvpalsdNrTleiaeisrslkalakelnvpvvalsqlnrsleqradkrpvnsdlresgsieqdadlimfiyrdevyhensdlkgiaeiiigkqrngpigtvrltfngqwsrfdnyagpqy > 6qem_E interface=335, lkvpphsieaeqsvlgglmldnerwddvaervvaddfytrphrhiftemarlqesgspidlitlaeslerqgqldsvggfaylaelskntpsaanisayadivreravvremisvaneiaeagfdpqgrtsedlldlaesrvfkiaesrankdegpkniadvldatvarieqlfqqphdgvtgvntgyddlnkktaglqpsdliivaarpsmgkttfamnlvenaamlqdkpvlifslempseqimmrslaslsrvdqtkirtgqlddedwarisgtmgillekrniyiddssgltptevrsrarriarehggiglimidylqlmrvpalsdnrTleiaeisrslkalakelnvpvvalsqlnrsleqradkrpvnsdlresgsieqdadlimfiyrdevyhensdlkgiaeiiigkqrngpigtvrltfngqwsrfdnyagpqy > 6qem_F interface=335, lkvpphsieaeqsvlgglmldnerwddvaervvaddfytrphrhiftemarlqesgspidlitlaeslerqgqldsvggfaylaelskntpsaanisayadivreravvremisvaneiaeagfdpqgrtsedlldlaesrvfkiaesrankdegpkniadvldatvarieqlfqqphdgvtgvntgyddlnkktaglqpsdliivaarpsmgkttfamnlvenaamlqdkpvlifslempseqimmrslaslsrvdqtkirtgqlddedwarisgtmgillekrniyiddssgltptevrsrarriarehggiglimidylqlmrvpalsdnrTleiaeisrslkalakelnvpvvalsqlnrsleqradkrpvnsdlresgsieqdadlimfiyrdevyhensdlkgiaeiiigkqrngpigtvrltfngqwsrfdnyagpqy > 6qem_G interface=143,146, mknvgdlmqrlqkmmpahikpafktgeellawqkeqgairsaalerenramkmqrtfnrsgirplhqncsfenyrvecegqmnalskarqyveefdgniasfifsgkpgtgknhlaaaicnelllrgksvliitvadimsamKdtFrnsgtseeqllndlsnvdllvideigvqteskyekviinqivdrrssskrptgmltnsnmeemtkllgervmdrmrlgnslwvifnwdsyrsr > 6qem_H interface=143,146,179, mknvgdlmqrlqkmmpahikpafktgeellawqkeqgairsaalerenramkmqrtfnrsgirplhqncsfenyrvecegqmnalskarqyveefdgniasfifsgkpgtgknhlaaaicnelllrgksvliitvadimsamKdtFrnsgtseeqllndlsnvdllvideigvqteskYekviinqivdrrssskrptgmltnsnmeemtkllgervmdrmrlgnslwvifnwdsyrsr > 6qem_I interface=143,146, mknvgdlmqrlqkmmpahikpafktgeellawqkeqgairsaalerenramkmqrtfnrsgirplhqncsfenyrvecegqmnalskarqyveefdgniasfifsgkpgtgknhlaaaicnelllrgksvliitvadimsamKdtFrnsgtseeqllndlsnvdllvideigvqteskyekviinqivdrrssskrptgmltnsnmeemtkllgervmdrmrlgnslwvifnwdsyrsr > 6qem_J interface=143,146, mknvgdlmqrlqkmmpahikpafktgeellawqkeqgairsaalerenramkmqrtfnrsgirplhqncsfenyrvecegqmnalskarqyveefdgniasfifsgkpgtgknhlaaaicnelllrgksvliitvadimsamKdtFrnsgtseeqllndlsnvdllvideigvqteskyekviinqivdrrssskrptgmltnsnmeemtkllgervmdrmrlgnslwvifnwdsyrsr > 6qem_K interface=143,146, mknvgdlmqrlqkmmpahikpafktgeellawqkeqgairsaalerenramkmqrtfnrsgirplhqncsfenyrvecegqmnalskarqyveefdgniasfifsgkpgtgknhlaaaicnelllrgksvliitvadimsamKdtFrnsgtseeqllndlsnvdllvideigvqteskyekviinqivdrrssskrptgmltnsnmeemtkllgervmdrmrlgnslwvifnwdsyrsr > 6qem_L interface=143,146,179, mknvgdlmqrlqkmmpahikpafktgeellawqkeqgairsaalerenramkmqrtfnrsgirplhqncsfenyrvecegqmnalskarqyveefdgniasfifsgkpgtgknhlaaaicnelllrgksvliitvadimsamKdtFrnsgtseeqllndlsnvdllvideigvqteskYekviinqivdrrssskrptgmltnsnmeemtkllgervmdrmrlgnslwvifnwdsyrsr
interface signature	TQ/T/NT/NT/T/T/KF/KFY/KF/KF/KF/KFY

Estimated binding specificities ?

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# IC=18.994 IC/col=0.731 n_of_columns=26

specificity:

A |   0  24   0  24   0  24  12  24  24  24  12  24  24  24  24   0   0   0   0   0   0   0   0   0   0   0
C |   0  24   0  24   0  24  12  24  24  24  24  24  24  24  24   0   0   0   0   0   0   0   0   0   0   0
G |   0  24   0  24   0  24  24  24  24  24  12  24  24  24  24   0   0   0   0   0   0   0   0   0   0   0
T |  96  24  96  24  96  24  48  24  24  24  48  24  24  24  24  96  96  96  96  96  96  96  96  96  96  96

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updated Wed Nov 30 06:26:08 2022