6r2v_B : 3D-footprint complex

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	ARABIDOPSIS NF-Y/CCAAT-BOX COMPLEX (NF-YB2)
reference	Chaves-Sanjuan et al. 'Plant 105 49 2021
source	ARABIDOPSIS THALIANA
experiment	X-ray (resolution=2.50, R-factor=0.202)
structural superfamily	Histone-fold;
sequence family	Histonelike transcription factor CBF/;
multimeric complexes	6r2v_ABC 7cvq_AB 7cvq_KL 7cvq_PQ
redundant complexes	7cvq
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6r2v_B interface=12, spreqdrflpiAnvsrimkkalpanakiskdaketmqecvsefisfvtgeasdkcqkekrktingddllwamttlgfedyveplkvylqrfre

  
  ------RT       +-----------------------------7lya_E    
                 ! 
  ------RT       !  +--------------------------7zs9_e    
               --7  ! 
  --IT--RA       !  !                         +7k78_E    
                 !  !         +---------------2 
  ------RT       +--6         !               +7wlr_E    
                    ! +-------4 
  ------RT          ! !       !                +1u35_G    
                    ! !       ! +--------------1 
  ------RT          +-5       +-3              +7lyb_G    
                      !         ! 
  ------RA            !         +--------------6t7a_C    
                      ! 
  RAETRT--            +------------------------4ne1_p

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updated Fri Sep 13 23:23:38 2024