interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameARABIDOPSIS NF-Y/CCAAT-BOX COMPLEX
(NF-YB2)
referenceChaves-Sanjuan et al. 'Plant 105 49 2021
sourceARABIDOPSIS THALIANA
experimentX-ray (resolution=2.50, R-factor=0.202)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/;
multimeric complexes6r2v_ABC 7cvq_AB 7cvq_KL 7cvq_PQ
redundant complexes7cvq
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RA--           +-----------------------------6g0l_D    
                 +-7 
  RT----       +-8 +-----------------------------8grq_A    
               ! ! 
  RT----       ! +-----------------------------8hr1_E    
               ! 
  RA----       !                            +1zla_C    
             --9              +-------------2 
  RA--RA       !         +----4             +6a5l_g    
               !         !    ! 
  RG----       ! +-------5    +--------------5x0y_G    
               ! !       ! 
  RG----       ! !       +-------------------8jla_C    
               +-6 
  RT----         !                           +8u14_G    
                 !            +--------------1 
  RG----         +------------3              +8ox0_C    
                              ! 
  RG----                      +--------------8txv_G    
             

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updated Wed Dec 18 05:28:09 2024