interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameARABIDOPSIS NF-Y/CCAAT-BOX COMPLEX
(NF-YC3)
referenceChaves-Sanjuan et al. 'Plant 105 49 2021
sourceARABIDOPSIS THALIANA
experimentX-ray (resolution=2.50, R-factor=0.202)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/; Core histone H2A/H2B/H3/H4;
multimeric complexes6r2v_ABC
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ----RG----                                 +8txv_G    
                              +--------------1 
  ----RG----             +----5              +5x0y_G    
                         !    ! 
  ----RG----         +---7    +--------------8ox0_C    
                     !   ! 
  ----RA----         !   !                   +1zla_C    
                   +-9   +-------------------3 
  ----RA--RA       ! !                       +6a5l_g    
                   ! ! 
  ----RG----       ! +-----------------------8jla_C    
                   !  
  RT--------     -10                          +9fgq_D    
                   !       +------------------2 
  ------RA--       !     +-6                  +6g0l_D    
                   !     ! ! 
  ----RT----       +-----8 +------------------8grq_A    
                         ! 
  ----RT----             !        +----------8u14_G    
                         +--------4 
  --LCRT----                      +----------8hr1_E    
                 

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updated Wed Dec 18 05:28:47 2024