interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameARABIDOPSIS NF-Y/CCAAT-BOX COMPLEX
(NF-YC3)
referenceChaves-Sanjuan et al. 'Plant 105 49 2021
sourceARABIDOPSIS THALIANA
experimentX-ray (resolution=2.50, R-factor=0.202)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/; Core histone H2A/H2B/H3/H4;
multimeric complexes6r2v_ABC
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ----RG----                                  +8txv_G    
                               +--------------1 
  ----RG----                   !              +5x0y_G    
                       +-------5 
  ----RA----           !       !             +1zla_C    
                     +-8       +-------------3 
  ----RG----         ! !                     +8ox0_C    
                   +-9 ! 
  ----RG----       ! ! +----------------------8jla_C    
                   ! ! 
  ----RA--RA       ! +-----------------------6a5l_g    
                 -10  
  ----RT----       !             +-----------8u14_G    
                   !    +--------4 
  --LCRT----       !    !        +-----------8hr1_E    
                   +----7 
  RT--------            !                     +9fgq_D    
                        ! +-------------------2 
  ------RA--            +-6                   +6g0l_D    
                          ! 
  ----RT----              +-------------------8grq_A    
                 

home
updated Sun Aug 3 13:09:21 2025