interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameARABIDOPSIS NF-Y/CCAAT-BOX COMPLEX
(NF-YC3)
referenceChaves-Sanjuan et al. 'Plant 105 49 2021
sourceARABIDOPSIS THALIANA
experimentX-ray (resolution=2.50, R-factor=0.202)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/; Core histone H2A/H2B/H3/H4;
multimeric complexes6r2v_ABC
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ----RT                                       +----7lyb_G    
                                   +-----------3 
  --LTRC                           !           +----3kwq_E    
                        +----------6 
  ----RT                !          !               +--1u35_G    
                        !          ! +-------------2 
  ----RG                !          +-5             +--7uv9_E    
                        !            ! 
  --LC--             +-10            +----------------8bvw_e    
                     !  !  
  RG----             !  ! +-------------------------7k6p_D    
                     !  ! ! 
  --LCRT             !  ! !                         +8byq_e    
                     !  ! !          +--------------1 
  ----RT             !  +-9     +----4              +8g57_E    
                  +-11    !     !    ! 
  ----RT          !  !    !  +--7    +--------------8cww_A    
                  !  !    !  !  ! 
  ----RG          !  !    +--8  +-------------------7yqk_E    
               +-12  !       ! 
  --LTRC       !  !  !       +----------------------6jm9_A    
               !  !  !  
  ----RA     -13  !  +-----------------------------1kx5_G    
               !  !  
  RG----       !  +-----------------------------3x1t_H    
               !  
  ----RT       +-----------------------------7zs9_e    
             

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updated Fri Sep 13 23:23:59 2024