interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameARABIDOPSIS NF-Y/CCAAT-BOX COMPLEX
(NF-YC3)
referenceChaves-Sanjuan et al. 'Plant 105 49 2021
sourceARABIDOPSIS THALIANA
experimentX-ray (resolution=2.50, R-factor=0.202)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/; Core histone H2A/H2B/H3/H4;
multimeric complexes6r2v_ABC
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ----RG--                                      +8txv_G    
                                 +--------------1 
  ----RG--                       !              +8upf_G    
                             +---4 
  ----RARA                   !   !              +6a5l_g    
                          +--5   +--------------2 
  ----RC--                !  !                  +7yqk_C    
                          !  ! 
  ----RA--                !  +------------------7e9c_F    
                        +-7 
  ----RT--              ! !                     +8u14_G    
                        ! ! +-------------------3 
  --HGRG--       +------8 +-6                   +8rbx_V    
                 !      !   ! 
  ----RC--       !      !   +--------------------7ux9_E    
               --9      ! 
  ----RT--       !      +----------------------6px1_A    
                 ! 
  RG------       +-----------------------------7ccr_H    
               

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updated Sat Jan 10 11:38:52 2026