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3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

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updated Sun Aug 3 13:14:51 2025

structure name	POSTS3_PMAR_LIG4_WT (ATP-dependent DNA ligase)
reference	Leiros et al. 'Nucleic 47 7147 2019
source	Prochlorococcus marinus
experiment	X-ray (resolution=1.99, R-factor=0.195)
structural superfamily	DNA ligase/mRNA capping enzyme, catalytic domain;Nucleic acid-binding proteins;
sequence family	ATP dependent DNA ligase domain;
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6rau_I interface=183,222,381,423, elfkeeiihqlelhpsrldkekiiseamedgiddffegirmaldplvtfgvkivpekeseksqnflwedfrklanklmqreltghaardailtamesatkeewngfyrrvlikdlrcgvsektinkiakkfpkyaipifscplahdsanhekkmigkkqieikldgvrvltiirqnkvemfsRngkqfhnfghiileienvlkedpapydlvldgevmsanFqdlmkqvhrkdgkqtkdavlhlfdlcplenfqkgrwntkqtarsllvkkwvakhslllkhiqtlewenvdldtiqgqkrfvelnksaveggyegvmikdpdgmyeckrthswlkakpfievtlkvvsveegtgrnkgrlgailvegeddgyeyslscgSgfsdiqreeywskrkhllgqlveiradaktkskdgvafslrFprfkcfrgf