legend  pdf

interface graphfootprint logointerface matrixatomic interactionsinterface residue numbers

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

home
updated Mon Dec 18 17:45:28 2023

structure name	PMAR-LIG_PRES3 (ATP-dependent DNA ligase)
reference	Leiros et al. 'Nucleic 47 7147 2019
source	Prochlorococcus marinus
experiment	X-ray (resolution=1.95, R-factor=0.231)
structural superfamily	DNA ligase/mRNA capping enzyme, catalytic domain;Nucleic acid-binding proteins;
sequence family	ATP dependent DNA ligase domain;
reference complex	6rar_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6rce_I interface=226,381,423, elfkeeiihqlelhpsrldkekiiseamedgiddffegirmaldplvtfgvkivpekeseksqnflwedfrklanklmqreltghaardailtamesatkeewngfyrrvlikdlrcgvsektinkiakkfpkyaipifscplahdsanhekkmigkkqieikldgvrvltiirqnkvemfsrngkqfhnfghiileienvlkedpapydlvldgevmsanfqdlMkqvhrkdgkqtkdavlhlfdlcplenfqkgrwntkqtarsllvkkwvakhslllkhiqtlewenvdldtiqgqkrfvelnksaveggyegvmikdpdgmyeckrthswlkakpfievtlkvvsveegtgrnkgrlgailvegeddgyeyslscgSgfsdiqreeywskrkhllgqlveiradaktkskdgvafslrFprfkcfrgf