6rui_ABQR : 3D-footprint complex

structure name	RNA POLYMERASE I PRE-INITIATION COMPLEX DNA OPENING INTERMEDIATE 2
source	SACCHAROMYCES CEREVISIAE
experiment	NMR
reference complex	5w5y_P 5w5y_Q
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6rui_A interface=932, mdiskpvgseitsvdfgiltakirnlsakqitnptvldnlghpvsgglydlalgaflrnlcstcgldekfcpghqghielpvpcynplffnqlyiylrasclfchhfrlksvevhryacklrllqyglidesykldeitldisstllnelkskrseyvdmaiakalsdgrttergsftatvnderkklvhefhkkllsrgkcdncgmfspkfrkdgftkifetalnekqitnnrvkgfistyilstevknildtvfrkeqcvlqyvfhsrpnlsrklvkadsffmdvlvvpptrfrlpsklgeevhensqnqllskvlttsllirdlnddlsklrvifsrlmnafvtiqndvnafidstkaqgrtsgkvpipgvkqalekkeglfrkhmmgkrvnyaarsvispdpnietneigvppvfavkltypepvtayniaelrqavingpdkwpgatqiqnedgslvsligmsveqrkalanqlltpssnvsthtlnkkvyrhiknrdvvlmnrqptlhkasmmghkvrvlpnektlrlhyantgaynadfdgdemnmhfpqnenaraealnlantdsqyltptsgspvrgliqdhisagvwltskdsfftreqyqqyiygcirpedghttrskivtlpptifkpyplwtgkqiittvllnvtppdmpginlisknkikneywgkgslenevlfkdgallcgildksqygaskygivhslhevygpevaakvlsvlgrlftnyitataftcgmddlrltaegnkwrtdilktsvdtgreaaaevtnldkdtpaddpellkrlqeilrdnnksgildavtsskvnaitsqvvskcvpdgtmkkfpcnsmqamalsgakgsnvnvsqimcllgqqalegrrvpvmvsgktlpsfkpyetdamaggyvkgrfysgikpqeyyfhcmagreglidtavktSrsgylqrcltkqlegvhvsydnsirdadgtlvqfmyggdaiditkeshmtqfefcldnyyallkkynpsaliehldvesalkyskktlkyrkkhskephykqsvkydpvlakynpakylgsvsenfqdklesfldknskgvnekkfralmqlkymrslinpgeavgiiasqsvgepstqmtlntfnvtlgiprlreivmtasaaiktpqmtlpiwndvsdeqadtfcksiskvllsevidkvivtettgtarsyvihmrffdnneyseeydvskeelqnvisnqfihlleaaivkeikkqkrveannnmnkvqrdrqsaiishhrfitkynfddesgkwcefklelaadtekllmvniveeicrksiirqiphidrcvhpepengkrvlvtegvnfqamwdqeafidvdgitsndvaavlktygveaarntivneinnvfsryaisvsfrhldliadmmtrqgtylafnrqgmetstssfmkmsyettcqfltkavldnereqldspsarivvgklnnvgtgsfdvlakvpna > 6rui_B interface=435,491,492, rtadfrtleresrfinppkdksafpllqeavqphigsfnaltegpdggllnlgvkdigekvifdgkplnsedeisnsgylgnklsvsveqvsiakpmsndverkvypsesrqrltsyrgklllklkwsvnngeenlfevrdcgglpvmlqsnrchlnkmspyelvqhkeesdeiggyfivngieklirmlivqrrnhpmaiirpsfanrgasyshygiqirsvrpdqtsqtnvlhylndgqvtfrfswrkneylvpvvmilkalchtsdreifdgiigndvkdsfltdrlelllrgfkkryphlqnrtqvlqylgdkfrvvfqaspdqsdlevgqevldrivlvhlgkdgsqdkfrmllfmirklyslvagecspdnpdatqhqevllggflygmilkekideylqniiaqvrmdinrgmainfkdkrymsrvlMrvnenigskmqyflstgnlvsqsgldlqqvsgytvvaekinfyrfishfrmvhrgSFfaqlktttvrkllpeswgflcpvhtpdgspcgllnhfahkcristqqsdvsripsilyslgvapashtfaagpslccvqidgkiigwvsheqgkiiadtlrywkvegktpglpidleigyvppstrgqypglylfgghsrmlrpvrylpldkedivgpfeqvymniavtpqeiqnnvhthveftptnilsilanltpfsdfnqsprnmyqcqmgkqtmgtpgvalchrsdnklyrlqtgqtpivkanlyddygmdnfpngfnavvavisytgydmddamiinksadergfgygtmyktekvdlalnrnrgdpitqhfgfgndewpkewlekldedglpyigtyveegdpicayfddtlnktkiktyhssepayieevnligdesnkfqelqtvsikyrirrtpqigdkfssrhgqkgvcsrkwptidmpfsetgiqpdiiinphafpsrmtigmfveslagkagalhgiaqdstpwifneddtpadyfgeqlakagynyhgnepmysgatgeelradiyvgvvyyqrlrhmvndkfqvrstgpvnsltmqpvkgrkrhggirvgemerdalighgtsfllqdrllnssdytqasvcrecgsilttqqsvprigsistvccrrcsmrfedakkgekifiddsqiwedgqgnkfvggnetttvaipfvlkyldselsamgirlrynvepk > 6rui_Q interface=149,203,204,207,208,287,288,291, tfirgpicgtdncpsrlwriidgrrtcqyghvmegdvefnddedlgagvitrrlnlttnatgsfqssqltnsqllqqqqrqshkkfkkligheakllflksfqfilkrqirwlitemrfpkefehvakiiwlkilktindqpqeelklQlhmtstisilylasthlslpvytcdyikwictakmpyfqaseilpkswriqlpNYyvSIlegsispfngqlynkialtcgmihfkeffnseiscqglllklvmqcalppefyfytkqviefeetdirnltlwertdeRHtgRvsnhaelrvlsyfmltinwmlsfdrdrqyplkwilsltesltqrtttsesigrnivkvvypdkptssdyfqwseeetleflkwmekqflptdqkiarrklykifpldreanhdgefndsthqltfiedlqeryakqtpffpparkeaigrllthiasqllvdfaiskeqlkdcisriknaclhrmn > 6rui_R interface=11, mfevpitltnRkfaqrrklkyqyinyisrrfdriskkssdeerkfwkkyekpeksfeiwrtvssqnkqpinkqkmtyhnfkkiekiplrkmeipllhctkenklyfqsisrgleplktstsevrnyrtrhivtltdllhlnvsrhnwslaykifatliripgvqikslwgigveildnlsnsssgldflqwmcqiyssksrfvqninyrsivppfqtgsrthtakfaitylwsslincqksmlidkisewvltppfmedaevwfiyaschllkadtlsrqfvnrdikinqvikhihyvrtflkicldkggfavpsrlienqlksfesrly
interface signature	S/MSF/QNYSIRHR/R

Estimated binding specificities ?

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# IC=10.361 IC/col=0.414 n_of_columns=25

specificity:

A |   0   6   0   0  24  24  24  68  96  96  96  24  24  24  24  24  24  24  24  24  24  24  24  75  64
C |   0   0   0   0  24  24  24  13   0   0   0  24  24  24  24  24  24  24  24  24  24  24  24   9  13
G |   0  84   0  96  24  24  24   9   0   0   0  24  24  24  24  24  24  24  24  24  24  24  24   6   6
T |  96   6  96   0  24  24  24   6   0   0   0  24  24  24  24  24  24  24  24  24  24  24  24   6  13

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updated Tue Sep 10 20:04:13 2024