6sdg_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF M. POLYMORPHA AUXIN RESPONSE FACTOR 2 (MPARF2) IN COMPLEX WITH HIGH AFFINITY DNA
reference	Weijers et al.
source	Marchantia polymorpha
experiment	X-ray (resolution=2.96, R-factor=?)
structural superfamily	DNA-binding pseudobarrel domain;
reference complex	8oj2_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6sdg_A interface=100,105,150,153,155, idaelwyacagpqkalppvgsvvaylpqghieqvasfnnqeldaqiprynlpavipcmlndiqlsadpdsdevyatltlcpmseqpkrksrsftktltvSdtstHggfsvprraaddclpkldmslnppnqelvakdlhgnewrfrhifRgqPkRhllttgwsvfvsqkrlvagdavlflrgengqlrvgvrraprkvltsptmhigvlaaaahaateksrfsliynprscpsefvipyskylkavksnfnvgqrfkmkfesedpsdrrhtgtitgicdfdparwpgsewrslqvnwdesssserqervspwevepgn > 6sdg_B interface=91,96,100,141,144,146, idaelwyacagpqkalppvgsvvaylpqghieqvasfnnqiprynlpavipcmlndiqlsadpdsdevyatltlcpmseqsrsftktltvSdtstHggfSvprraaddclpkldmslnppnqelvakdlhgnewrfrhifRgqPkRhllttgwsvfvsqkrlvagdavlflrgengqlrvgvrraprqqqlqpkvltsptmhigvlaaaahaateksrfsliynprscpsefvipyskylkavksnfnvgqrfkmkfespsdrrhtgtitgicdfdparwpgsewrslqvnwdesssserqervspwevepgns
interface signature	SHRPR/SHSRPR

Estimated binding specificities ?

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# IC=14.971 IC/col=0.749 n_of_columns=20

specificity:

A |  15   0   0   0   6   0   0   0  24  24  24  24  24   0   0  10  24  80   0  96
C |  15   0   0   0  65   0   0  96  24  24  24  24  24   0  96  61  24   5  96   0
G |  16   0  96   0  15  96  96   0  24  24  24  24  24  96   0  15  24   5   0   0
T |  50  96   0  96  10   0   0   0  24  24  24  24  24   0   0  10  24   6   0   0

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updated Sat Dec 14 19:59:51 2024