6sdg_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DNA BINDING DOMAIN OF M. POLYMORPHA AUXIN RESPONSE FACTOR 2 (MPARF2) IN COMPLEX WITH HIGH AFFINITY DNA
reference	Weijers et al.
source	Marchantia polymorpha
experiment	X-ray (resolution=2.96, R-factor=?)
structural superfamily	DNA-binding pseudobarrel domain;
reference complex	8oj2_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6sdg_A interface=100,105,150,153,155, idaelwyacagpqkalppvgsvvaylpqghieqvasfnnqeldaqiprynlpavipcmlndiqlsadpdsdevyatltlcpmseqpkrksrsftktltvSdtstHggfsvprraaddclpkldmslnppnqelvakdlhgnewrfrhifRgqPkRhllttgwsvfvsqkrlvagdavlflrgengqlrvgvrraprkvltsptmhigvlaaaahaateksrfsliynprscpsefvipyskylkavksnfnvgqrfkmkfesedpsdrrhtgtitgicdfdparwpgsewrslqvnwdesssserqervspwevepgn > 6sdg_B interface=91,96,100,141,144,146, idaelwyacagpqkalppvgsvvaylpqghieqvasfnnqiprynlpavipcmlndiqlsadpdsdevyatltlcpmseqsrsftktltvSdtstHggfSvprraaddclpkldmslnppnqelvakdlhgnewrfrhifRgqPkRhllttgwsvfvsqkrlvagdavlflrgengqlrvgvrraprqqqlqpkvltsptmhigvlaaaahaateksrfsliynprscpsefvipyskylkavksnfnvgqrfkmkfespsdrrhtgtitgicdfdparwpgsewrslqvnwdesssserqervspwevepgns
interface signature	SHRPR/SHSRPR

Estimated binding specificities ?

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# IC=13.000 IC/col=0.650 n_of_columns=20

specificity:

A |   0   0   9  24  24   7   0  24  24  24  24  24   7   0   0  24  96   0  96  73
C |   0   0   7  24  24   7  96  24  24  24  24  24   7  96  96  24   0  96   0   7
G |   0  96   7  24  24  75   0  24  24  24  24  24  75   0   0  24   0   0   0   9
T |  96   0  73  24  24   7   0  24  24  24  24  24   7   0   0  24   0   0   0   7

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updated Tue Jan 6 12:43:25 2026