6sjb_BCD : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF THE RECBCD CHI RECOGNISED COMPLEX
source	ESCHERICHIA COLI
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;Restriction endonuclease-like;
reference complex	6sjf_B 6sjf_C 6sjf_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6sjb_B interface=60,126,130,134,146,148,150,248,333,336,404,405,541,542,566,724,743,806,889,908, aetldplrlplqgerlieasagtgktftiaalylrlllglggsaafprpltveellvvtFteaataelrgrirsnihelriaclrettdnplyerlleeiddkaqaaqwlllaerqmdeaavftiHgfcQrmlNlnafesgmlfeQqLiEdesllryqacadfwrrhcyplpreiaqvvfetwkgpqallrdinrylqgeapvikapppddetlasrhaqivaridtvkqqwrdavgeldaliessgIdrrkfnrsnqakwidkisawaeeetnsyqlpeslekftprhplfeaidqllaeplsirdlvitralaeiretvarekrrrgelgFddMlsrldsalrsesgevlaaairtrfpvamidefqdtdpqqyrifrriwhhqpetallligdpkqaiyaFRgadiftymkarsevhahytldtnwrsapgmvnsvnklfsqtddafmfreipfipvksagknqalrfvfkgetqpamkmwlmegescgvgdyqstmaqvcaaqirdwlqagqrgeallmngddarpvrasdisvlvRSrqeaaqvrdaltlleipsvylsnRdsvfetleaqemlwllqavmtperentlrsalatsmmglnaldietlnndehawdvvveefdgyrqiwrkrgvmpmlralmsarniaenllataggerrltdilhisellqeagtqlesehalvrwlsqhilepdsnassqqmrlesdkhlvqivtiHkskgleyplvwlpfitnfRvqeqafyhdrhsfeavldlnaapesvdlaeaerlaedlrllyvaltrsvwhcslgvaplvrrRgdkkgdtdvhqsalgrllqkgepqdaaglrtciealcdddiawqtaqtgdnqpwqvndvstaelnaktlqrlpgdnwrvtsySglqptltphqfprgaspgTflhslfedldftqpvdpnwvreklelggfesqwepvltewitavlqaplnetgvslsqlsarnkqvemefylpisepliasqldtlirqfdplsagcpplefmqvrgmlkgfidlvfrhegryyllayksnwlgedssaytqqamaaamqahrydlqyqlytlalhrylrhriadydyehhfggviylflrgvdkehpqqgiyttrpnaglialmdemfag > 6sjb_C interface=37,39,40,43,62,64,65,66,67,70,84,88,133,136,137,140,141,186,443,492,556,649,650,651,652,653,663,665,666,685,706,708,712,715,875,878,1073,1078,1079,1080,1081,1082, mlrvyhsnrldvlealmefivererlddpfepemilVqSTgmAqwlqmtlsqkfgiaanidFpLPASfiWdmfvrvlpeipkeSafnKqsmswklmtllpqlleredftllrhyltddsdkrklfqlsskaaDlfDQylVYrpdwlaqwetghlveglgeaqawqaplwkalveythqlgqprwhRanlyqrfietlesattcppglpsrvficgisalppvylqalqalgkhieihllftnpcryywgdikdpaylaklltrqrrhsfedrelplfrdsenagqlfnsdgeqdvgnpllaswgklgrdyiyllsdlessqeldafvdvtpdnllhniqsdilelenravagvnieefsrsdnkrpldpldssitfhvchspqrevevlhdrllamleedptltprdiivmvadidsyspfiqavfgsapadrylpyaisdrRarqshpvleafisllslpdsrfvsedvlalldvpvlaarfditeeglrYlrqwvnesgirwgidddnvrelelpatgqhtwrfgltrmllgyamesaqgewqsvlpydessgLiaelvghlasllmqlniwrrglaqerpleewlpvcrdmlnafflpdaeteaamtlieqqwqaiiaeglgaqygdavplsllrdelaqrldqeRISQRflagpvnicTlMPmrsipfkvvcllgmndgvYprqlaplgfdlmsqkpkrgdRsRrddDryLflealisaqqklyisyigrsiqdnserfpsvlvqelidyigqshylpgdealncdesearvkahltclhtrmpfdpqnyqpgerqsyarewlpaasqagkahsefvqplpftlpetvpletlqrfwahpvraffqmrlqvnfrtedseipdtepfilegLsrYqinqqllnalveqddaerlfrrfraagdlpygafgeifwetqcqemqqladrviacrqpgqsmeidlacngvqitgwlpqvqpdgllrwrpsllsvaqgmqlwlehlvycasggngesrlflrkdgewrfpplaaeqalhylsqliegyregmsapllvlpesggawlktcydaqndamldddstlqkartkflQayegNMMVRgegddiwyqrlwrqltpetmeaiveqsqrfllplfrfnq > 6sjb_D interface=3,39,232,237,238,239,245,295,296,477,530,551, avEhkqlrpldvqfaltvagdehpavtlaaallshdagEghvclplsrlenneashpllatcvseigelqnweecllasqavsrgdeptpmilcgdrlylnrmwcnertvarffnevnhaievdeallaqtldklfpvsdeinwqkvaaavaltrrisvisggpgtgktttvakllaaliqmadgercrirlaaptgkaaarlteslgkalrqlpltdeqkkripedastlHrllgAQPgsqrlRhhagnplhldvlvvdeasmidlpmmsrlidalpdharviflgdrdqlasVEagavlgdicayanagftaerarqlsrltgthvpagtgteaaslrdslcllqksyrfgsdsgigqlaaainrgdktavktvfqqdftdiekrllqsgedyiamleealagygryldllqaraepdliiqafneyqllcalregpfgvaglnerieqfmqqkrkihrhphsrwyegrpvmiaRndsalglfngdigialdrgqgtrvwfampdgniksvqpsrlpehettwamtvHksqgsefdhaalilpsqrtpVvtrelvytavtrarrrlslyaderilsaaiatrterrsglaalfss
interface signature	FHQNQLEIFMFRRSRHRRST/VSTAFLPASWSKDDQVYRRYLRISQRTMPYRRDLLYQNMMVR/EEHAQPRVERHV

Estimated binding specificities ?

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# IC=38.399 IC/col=0.565 n_of_columns=68

specificity:

A |   0   6  12   0   0   0   0   0  24   0   0   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  12  24  24   0   0   0   0   0   0   0   0  24   0   0   0   0   0   0   0   0   0  24  24   6
C |   0   6  12   0   0   0   0   0  24   0   0   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0  24  24  96   0   0   0   0   0   0   0  24   0  96   0   0   0   0   0   0   0  24  24   6
G |   0   6   6   0   0   0   0   0  24   0   0   0  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  72  24  24   0   0   0   0   0   0   0   0  24  96   0   0  96  96   0  96  96   0  24  24   6
T |  96  78  66  96  96  96  96  96  24  96  96  96   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  12  24  24   0  96  96  96  96  96  96  96  24   0   0  96   0   0  96   0   0  96  24  24  78

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updated Sat Dec 14 20:18:58 2024