6sjg_BCD : 3D-footprint complex

structure name	CRYO-EM STRUCTURE OF THE RECBCD NO CHI NEGATIVE CONTROL COMPLEX
source	ESCHERICHIA COLI
experiment	NMR
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;Restriction endonuclease-like;
reference complex	6sjf_B 6sjf_C 6sjf_D
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6sjg_B interface=60,126,148,248,333,404,405,541,542,566,724,743,806, aetldplrlplqgerlieasagtgktftiaalylrlllglggsaafprpltveellvvtFteaataelrgrirsnihelriaclrettdnplyerlleeiddkaqaaqwlllaerqmdeaavftiHgfcqrmlnlnafesgmlfeqqLiedesllryqacadfwrrhcyplpreiaqvvfetwkgpqallrdinrylqgeapvikapppddetlasrhaqivaridtvkqqwrdavgeldaliessgIdrrkfnrsnqakwidkisawaeeetnsyqlpeslekftprhplfeaidqllaeplsirdlvitralaeiretvarekrrrgelgFddmlsrldsalrsesgevlaaairtrfpvamidefqdtdpqqyrifrriwhhqpetallligdpkqaiyaFRgadiftymkarsevhahytldtnwrsapgmvnsvnklfsqtddafmfreipfipvksagknqalrfvfkgetqpamkmwlmegescgvgdyqstmaqvcaaqirdwlqagqrgeallmngddarpvrasdisvlvRSrqeaaqvrdaltlleipsvylsnRdsvfetleaqemlwllqavmtperentlrsalatsmmglnaldietlnndehawdvvveefdgyrqiwrkrgvmpmlralmsarniaenllataggerrltdilhisellqeagtqlesehalvrwlsqhilepdsnassqqmrlesdkhlvqivtiHkskgleyplvwlpfitnfRvqeqafyhdrhsfeavldlnaapesvdlaeaerlaedlrllyvaltrsvwhcslgvaplvrrRgdkkgdtdvhqsalgrllqkgepqdaaglrtciealcdddiawqtaqtgdnqpwqvndvstaelnaktlqrlpgdnwrvtsysglqptltphqfprgaspgtflhslfedldftqpvdpnwvreklelggfesqwepvltewitavlqaplnetgvslsqlsarnkqvemefylpisepliasqldtlirqfdplsagcpplefmqvrgmlkgfidlvfrhegryyllayksnwlgedssaytqqamaaamqahrydlqyqlytlalhrylrhriadydyehhfggviylflrgvdkehpqqgiyttrpnaglialmdemfag > 6sjg_C interface=492,858,875,878,879,1073,1078,1079,1080,1081,1082, mlrvyhsnrldvlealmefivererlddpfepemilvqstgmaqwlqmtlsqkfgiaanidfplpasfiwdmfvrvlpeipkesafnkqsmswklmtllpqlleredftllrhyltddsdkrklfqlsskaadlfdqylvyrpdwlaqwetghlveglgeaqawqaplwkalveythqlgqprwhranlyqrfietlesattcppglpsrvficgisalppvylqalqalgkhieihllftnpcryywgdikdpaylaklltrqrrhsfedrelplfrdsenagqlfnsdgeqdvgnpllaswgklgrdyiyllsdlessqeldafvdvtpdnllhniqsdilelenravagvnieefsrsdnkrpldpldssitfhvchspqrevevlhdrllamleedptltprdiivmvadidsyspfiqavfgsapadrylpyaisdrrarqshpvleafisllslpdsrfvsedvlalldvpvlaarfditeeglrYlrqwvnesgirwgidddnvrelelpatgqhtwrfgltrmllgyamesaqgewqsvlpydessgliaelvghlasllmqlniwrrglaqerpleewlpvcrdmlnafflpdaeteaamtlieqqwqaiiaeglgaqygdavplsllrdelaqrldqerisqrflagpvnictlmpmrsipfkvvcllgmndgvyprqlaplgfdlmsqkpkrgdrsrrdddrylflealisaqqklyisyigrsiqdnserfpsvlvqelidyigqshylpgdealncdesearvkahltclhtrmpfdpqnyqpgerqsyarewlpaasqagkahsefvqplpftlpetvpletlqrfwahpvraffqmrlqvnfRtedseipdtepfilegLsrYQinqqllnalveqddaerlfrrfraagdlpygafgeifwetqcqemqqladrviacrqpgqsmeidlacngvqitgwlpqvqpdgllrwrpsllsvaqgmqlwlehlvycasggngesrlflrkdgewrfpplaaeqalhylsqliegyregmsapllvlpesggawlktcydaqndamldddstlqkartkflQayegNMMVRgegddiwyqrlwrqltpetmeaiveqsqrfllplfrfnq > 6sjg_D interface=3,39,232,237,238,239,245,295,296,477,530,550,551, avEhkqlrpldvqfaltvagdehpavtlaaallshdagEghvclplsrlenneashpllatcvseigelqnweecllasqavsrgdeptpmilcgdrlylnrmwcnertvarffnevnhaievdeallaqtldklfpvsdeinwqkvaaavaltrrisvisggpgtgktttvakllaaliqmadgercrirlaaptgkaaarlteslgkalrqlpltdeqkkripedastlHrllgAQPgsqrlRhhagnplhldvlvvdeasmidlpmmsrlidalpdharviflgdrdqlasVEagavlgdicayanagftaerarqlsrltgthvpagtgteaaslrdslcllqksyrfgsdsgigqlaaainrgdktavktvfqqdftdiekrllqsgedyiamleealagygryldllqaraepdliiqafneyqllcalregpfgvaglnerieqfmqqkrkihrhphsrwyegrpvmiaRndsalglfngdigialdrgqgtrvwfampdgniksvqpsrlpehettwamtvHksqgsefdhaalilpsqrtPVvtrelvytavtrarrrlslyaderilsaaiatrterrsglaalfss
interface signature	FHLIFFRRSRHRR/YRLYQQNMMVR/EEHAQPRVERHPV

Estimated binding specificities ?

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# IC=25.659 IC/col=0.475 n_of_columns=54

specificity:

A |   0   0  11   0   0   0   0   0  24   0   0   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  11  24  24  24  24  24  24  24   5  24  12   0   0   0   0   0   0   0
C |   0   0  12   0   0   0   0   0  24   0   0   0   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  16  24  24  24  24  24  24  24   5  24  11  96   0   0   0   0   0   0
G |   0   0  11   0   0   0   0   0  24   0   0   0  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  58  24  24  24  24  24  24  24  79  24  11   0   0   0   0   0   0   0
T |  96  96  62  96  96  96  96  96  24  96  96  96   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  11  24  24  24  24  24  24  24   7  24  62   0  96  96  96  96  96  96

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updated Tue Sep 10 20:42:59 2024