interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF HUMAN SOX11 TRANSCRIPTION FACTOR IN COMPLEX WITH A SHORT DNA FRAGMENT
(Transcription factor SOX-11)
referenceDodonova et al. Nature 580 669 2020
sourceHomo sapiens
experimentX-ray (resolution=2.50, R-factor=0.228)
structural superfamilyHMG-box;
sequence familyHMG high mobility group box;
redundant complexes6t7d 6t7c 6t7a
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRNFMRNASYP

Estimated binding specificities ?

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# IC=8.121 IC/col=1.015 n_of_columns=8 specificity:   
A |   0  66  96  96  12   0  10   0
C |   0  10   0   0  10   0  12   0
G |   0  10   0   0   0   0  64   0
T |  96  10   0   0  74  96  10  96
scan!

Dendrogram of similar interfaces ?

matrix format

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updated Mon Dec 18 18:09:15 2023