interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.


Dendrogram of similar interfaces ?

matrix format
structure nameSTRUCTURE OF THE S. CEREVISIAE REPLICATIVE HELICASE CMG IN COMPLEX WITH A FORKED DNA
(DNA REPLICATION LICENSING FACTOR MCM6)
sourceSACCHAROMYCES CEREVISIAE
experimentNMR
structural superfamilyNucleic acid-binding proteins;P-loop containing nucleoside triphosphate hydrolases;
sequence familyMCM2/3/5 family;
multimeric complexes6u0m_25 6u0m_3467
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  --------------------------------------------RT----------                                     +---6u0m_6    
                                                                                           +---2 
  --------------------------------------------RT----------                                 !   +---6raw_6    
                                                                                           ! 
  --------------------------------------------RT----------                               +-8     +---6xtx_7    
                                                                                         ! !   +-3 
  ----------------------------------------------ETKT--YT--                               ! !   ! +---6mii_F    
                                                                                         ! +---7 
  ----------------------------------------------------LT--                            +--9     ! +---6xtx_4    
                                                                                      !  !     +-5 
  ----------------------------------------------------WT--                            !  !       +---6u0m_2    
                                                                                      !  ! 
  --------------------------------------------------RT----                            !  !    +---6raw_5    
                                                                             +-------10  +----4 
  ----------------------------------------------------FTAT                   !        !       +---6xtx_6    
                                                                             !        !  
  --------------------------------------------KT----------                   !        !         +-6sko_7    
                                                                          +-12        !       +-1 
  ------------------------------------------VT--------YT--                !  !        +-------6 +-6sko_6    
                                                                          !  !                ! 
  ----------------------------------------------------WT--                !  !                +---6sko_2    
                                                                 +-------13  !  
  ----------------------------------------------------FT--       !        !  +--------------------6sko_5    
                                                                 !        !  
  --------------------------------------------RT----------     -14        !    +---------------6xtx_5    
                                                                 !        +---11  
  RTETKT------RT----MT--RTFT--------------RT--------------   L   !             +---------------4pog_H    
                                                                 !  
  ------VCNCTCACSCEC--TCECWCRCFCVCECYCQCRC----------------   L   +-----------------------------1eyg_D    
                                                               

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updated Tue Dec 19 14:57:27 2023