6vvv_FT : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF A MYCOBACTERIUM SMEGMATIS TRANSCRIPTION INITIATION COMPLEX WITH RIFAMPICIN-RESISTANT RNA POLYMERASE
reference	Campbell et al. Proc.Natl.Acad.Sci.USA 117 30423 2020
experiment	X-ray (resolution=3.20, R-factor=?)
structural superfamily	C-terminal domain of RNA polymerase alpha subunit;
reference complex	5tw1_T
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6vvv_F interface=125,126,129,132,133,146,147,150,265,275,276,277,278,280,281, adsvraylkqigkvallnaeeevelakrieaglyatqklaelaekgeklpvqqrrdmqwicrdgdraknhlleanlrlvvslakrytgrgmafldliqegnlgliravekfdytkgykfstyatWWirQaiTRamadqartiripVHmvEvinklgriqrellqdlgreptpeelakemditpekvleiqqyarepisldqtigdegdsqlgdfiedseavvavdavsftllqdqlqsvletlsereagvvrlrfgltdgqprtLdeigqvygvTRERiRQiesktmsklrhpsrsqvlrdy > 6vvv_T interface=9, iddldltvRsynclkregvhtvgelvartesdlldirnfgqksidevkiklhq
interface signature	WWQTRVHELTRERRQ/R

Estimated binding specificities ?

readout + contact

# IC=13.002 IC/col=0.520 n_of_columns=25

specificity:

A |   6   0   6   0  96   0  75  24  24  24  24  24  24  24  24  24  24  24  24   6  24   0   0   0   7
C |  75   0   6   0   0  96   9  24  24  24  24  24  24  24  24  24  24  24  24   6  24   0   0  96   0
G |   9   0   6  96   0   0   6  24  24  24  24  24  24  24  24  24  24  24  24   6  24   0  96   0   0
T |   6  96  78   0   0   0   6  24  24  24  24  24  24  24  24  24  24  24  24  78  24  96   0   0  89

scan!

home
updated Thu Jul 31 03:32:51 2025