6y93_AB : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF THE NUCLEOID OCCLUSION FACTOR (NOC) COMPLEXED TO THE NOC-BINDING SITE (NBS)
reference	Stevenson et al. 'Cell 32 107928 2020
source	Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168) / Bacillus subtilis (strain 168)
experiment	X-ray (resolution=2.23, R-factor=?)
structural superfamily	KorB DNA-binding domain-like;
reference complex	6y93_B
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 6y93_A interface=33,34,35,37,38,41,61,64,93, elssieeahayarllelhdltqealaqrlgkgQSTiANklRllklpqpvqeaimekkiteRhaRaliplkqpelqvtllteiiekslnvkqtEdrvvkmleqgqr > 6y93_B interface=46,47,48,50,51,54,74,77, tasvalienlqreelssieeahayarllelhdltqealaqrlgkgQSTiANklRllklpqpvqeaimekkiteRhaRaliplkqpelqvtllteiiekslnvkqtedrvvkmleqg
interface signature	QSTANRRRE/QSTANRRR

Estimated binding specificities ?

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# IC=10.153 IC/col=0.635 n_of_columns=16

specificity:

A |  15  82   2   1  11   0  15  19  18   3   6  79  92  59   3  50
C |  15   4   4   2  12  95  72  32  25   3   2   5   2  13   5  15
G |  14   6   4   0  10   0   6  25  33  86  77   5   2  14   4  15
T |  52   4  86  93  63   1   3  20  20   4  11   7   0  10  84  16

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updated Sun Dec 15 01:11:56 2024