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structure nameCRYSTAL STRUCTURE OF DUF1998 HELICASE MRFA BOUND TO DNA
(Uncharacterized ATP-dependent helicase YprA)
referenceRoske et al. 'Nucleic 49 504 2021
sourceBacillus subtilis (strain 168) / Bacillus subtilis (strain 168)
experimentX-ray (resolution=3.16, R-factor=0.222)
structural superfamilyP-loop containing nucleoside triphosphate hydrolases;
sequence familyDEAD/DEAH box helicase; Domain of unknown function DUF1998; Helicase conserved Cterminal domain;
multimeric complexes6znp_AB 6znq_AB
redundant complexes6znq_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB

No structural evidence for specific binding to DNA (<4 informative columns)


Dendrogram of similar interfaces ?

matrix format
  
  --------DC--HA----------------------NT----FASASCRCSC------DANT                    +------------------6znp_A    
                                                                                 +--4 
  ----------ET--NGRGSGWG--------------ICKC----------------------                 !  ! +----------------7aud_E    
                                                                                 !  +-3 
  --RARA--DA--------------------------QA------------------------   L           +-5    +----------------4qqw_A    
                                                                               ! ! 
  --------------------------------SGRT--------------------------               ! !             +-------7enn_K    
                                                                           +---6 +-------------1 
  --------EG--------------------------RG------------------------           !   !               +-------6ftx_W    
                                                                           !   ! 
  RC----HC----------------QT------------------------------------         +-7   !         +------------6m6b_M    
                                                                         ! !   +---------2 
  ----------------------RT------------SCPGHC--------------------   L     ! !             +------------5v9x_A    
                                                                       +-8 ! 
  --------------------------HA--RA------------------------------   L   ! ! +--------------------------3kqh_B    
                                                                     --9 ! 
  ----------------------QT----WT--LT------------------STFTKT----       ! +---------------------------5vhe_A    
                                                                       ! 
  TG------------------------------------------------------------   L   +-----------------------------2v1u_A    
                                                                     

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updated Sat Sep 14 00:59:41 2024