7amn_AB : 3D-footprint complex

structure name	STRUCTURE OF LUXR WITH DNA (REPRESSION)
reference	Reverter et al. 'Nucleic 49 3274 2021
source	Vibrio alginolyticus
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	7amn_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7amn_A interface=2,4,42,43,44,45,47,48, pRtRlspikrkqqlmeialevfarrgigrgghadiaeiaqvSVATvFNyfptredlvdevlnhvvrqfsnflsdnidldlharenianitnamielvsqdchwlkvwfewsastrdevwplfvstnrtnqllvqnmfikaiergevcdqhdsehlanlfhgicyslfvqanraaelkhlvnsyldmlci > 7amn_B interface=1,3,41,43,44,46,47, RtRlspikrkqqlmeialevfarrgigrgghadiaeiaqvSvATvFNyfptredlvdevlnhvvrqfsnflsdnidldlharenianitnamielvsqdchwlkvwfewsastrdevwplfvstnrtnqllvqnmfikaiergevchdsehlanlfhgicyslfvqanraaelkhlvnsyldmlci
interface signature	RRSVATFN/RRSATFN

Estimated binding specificities ?

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# IC=15.250 IC/col=0.726 n_of_columns=21

specificity:

A |   0  69   0   0  24  96   9  72  24  24  24  24   6   9  12  24  96  96   0  93  90
C |   3   9   0   0  24   0   6   9  24  24  24  24   3   0  15  24   0   0   3   0   3
G |   0   9   0   0  24   0   3   9  24  24  24  24   6   0   6  24   0   0   0   3   3
T |  93   9  96  96  24   0  78   6  24  24  24  24  81  87  63  24   0   0  93   0   0

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updated Sun Dec 15 02:28:09 2024