7amn_AB : 3D-footprint complex

structure name	STRUCTURE OF LUXR WITH DNA (REPRESSION)
reference	Reverter et al. 'Nucleic 49 3274 2021
source	Vibrio alginolyticus
experiment	X-ray (resolution=2.30, R-factor=?)
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	7amn_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7amn_A interface=2,4,42,43,44,45,47,48, pRtRlspikrkqqlmeialevfarrgigrgghadiaeiaqvSVATvFNyfptredlvdevlnhvvrqfsnflsdnidldlharenianitnamielvsqdchwlkvwfewsastrdevwplfvstnrtnqllvqnmfikaiergevcdqhdsehlanlfhgicyslfvqanraaelkhlvnsyldmlci > 7amn_B interface=1,3,41,43,44,46,47, RtRlspikrkqqlmeialevfarrgigrgghadiaeiaqvSvATvFNyfptredlvdevlnhvvrqfsnflsdnidldlharenianitnamielvsqdchwlkvwfewsastrdevwplfvstnrtnqllvqnmfikaiergevchdsehlanlfhgicyslfvqanraaelkhlvnsyldmlci
interface signature	RRSVATFN/RRSATFN

Estimated binding specificities ?

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# IC=15.540 IC/col=0.740 n_of_columns=21

specificity:

A |   0  68   0   0  24  96  10  71  24  24  24  24   5  10  10  24  96  96   0  93  90
C |   2  10   0   0  24   0   5  10  24  24  24  24   2   0  13  24   0   0   0   0   2
G |   0  10   0   0  24   0   2   8  24  24  24  24   5   0   5  24   0   0   0   2   2
T |  94   8  96  96  24   0  79   7  24  24  24  24  84  86  68  24   0   0  96   1   2

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updated Wed Sep 11 02:25:04 2024