7amt_AB : 3D-footprint complex

structure name	STRUCTURE OF LUXR WITH DNA (ACTIVATION)
reference	Reverter et al. 'Nucleic 49 3274 2021
source	Vibrio alginolyticus
experiment	X-ray (resolution=2.60, R-factor=?)
structural superfamily	Homeodomain-like;Tetracyclin repressor-like, C-terminal domain;
reference complex	7amn_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7amt_A interface=2,40,42,43,45, tRlspikrkqqlmeialevfarrgigrgghadiaeiaqvSvATvFnyfptredlvdevlnhvvrqfsnflsdnidldlharenianitnamielvsqdchwlkvwfewsastrdevwplfvstnrtnqllvqnmfikaiergevcdqhdsehlanlfhgicyslfvqanraaelkhlvnsyldmlc > 7amt_B interface=38,40,43,44, lspikrkqqlmeialevfarrgigrgghadiaeiaqvSvAtvFNyfptredlvdevlnhvvrqfsnflsdnidldlharenianitnamielvsqdchwlkvwfewsastrdevwplfvstnrtnqllvqnmfikaiergevchdsehlanlfhgicyslfvqanraaelkhlvnsyldmlci
interface signature	RSATF/SAFN

Estimated binding specificities ?

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# IC=8.853 IC/col=0.492 n_of_columns=18

specificity:

A |   0  75  24   0  24  24  81  79  24  24  24  24   0   7  24  96  24  79
C |   0  11  24   0  24  24   5   7  24  24  24  24   0   5  24   0  24   7
G |   0   5  24   0  24  24   5   5  24  24  24  24   0  79  24   0  24   5
T |  96   5  24  96  24  24   5   5  24  24  24  24  96   5  24   0  24   5

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updated Wed Sep 11 02:25:21 2024