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structure nameSTRUCTURE OF AN ENGINEERED HELICASE DOMAIN CONSTRUCT FOR HUMAN BLOOM SYNDROME PROTEIN (BLM)
(BLOOM SYNDROME PROTEIN,BLOOM SYNDROME PROTEIN)
referenceOliver et al.
sourceHOMO SAPIENS
experimentX-ray (resolution=2.96, R-factor=0.231)
structural superfamilyP-loop containing nucleoside triphosphate hydrolases;HRDC-like;
sequence familyDEAD/DEAH box helicase; Helicase conserved Cterminal domain; HRDC domain;
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence

No structural evidence for specific binding to DNA (<4 informative columns)


Dendrogram of similar interfaces ?

matrix format
  
  ------ET----NGRGSG------WGFARA--------------------IC--KCHT--TG----RCLC--MCEG--------HGYGFGNTNT                          +------------7aud_E    
                                                                                                                     +----5 
  ----------HA--------------------------------------NT------------------------------------------                +----8    +------------6znp_A    
                                                                                                                !    ! 
  ------DA------------------------------------------QA------------RASA--------SA--YA------------   L            !    +-----------------4qqw_A    
                                                                                                             +-10  
  RC----HC----------------------QT--------------------------------------------------------------             !  !         +------------6m6b_M    
                                                                                                             !  !      +--6 
  --RTQT--EG------------QTWTFGRG--KGCGNCSG--KG--------DGRG--DC--WC----CG------EGKG--------------   L         !  !      !  +------------6crm_A    
                                                                                                             !  +------7 
  --------------------------------------------------VC--KC------------MCVC----------EC----------             !         !             +-4u7d_A    
                                                                                                             !         +-------------1 
  --------------------------------------------------IC--KC----------RTLC------------------------          +-11                       +-4o3m_A    
                                                                                                          !  !  
  ----------------------------------------------SGRT--------------------------------------------          !  !                 +------7enn_K    
                                                                                                          !  !           +-----3 
  ------EG------------------------------------------RG------------------------------------------          !  !           !     +------6ftx_W    
                                                                                                          !  !   +-------4 
  ----------------------------------------------QT----------------------------------------------       +-12  !   !       !        +---6ne3_W    
                                                                                                       !  !  +---9       +--------2 
  ------------------HCRT------------------------------------------------------------------------       !  !      !                +---6gen_M    
                                                                                                       !  !      ! 
  --------------------------------------------SG--KT--------------------------------------------     -13  !      +--------------------7amv_W    
                                                                                                       !  !  
  ------QT--------------------------------WT----LT----------------------------------------------       !  +--------------------------5vhe_A    
                                                                                                       !  
  ------------------------------------HA------RA------------------------------------------------   L   +---------------------------3kqh_B    
                                                                                                     

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updated Sat Sep 14 01:55:47 2024