7beg_BCDFG : 3D-footprint complex

structure name	STRUCTURES OF CLASS I BACTERIAL TRANSCRIPTION COMPLEXES
source	ESCHERICHIA COLI / KLEBSIELLA PNEUMONIAE
experiment	NMR
structural superfamily	Insert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex	3iyd_A 6psq_M 7c97_K 8y6u_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7beg_B interface= teflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspveriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdfdpillrpvddleltvrsanclkaeaihyigdlvqrtevellktpnlgkkslteikdvlasrglslgmrlenwp > 7beg_C interface=142,182,199,366,370,373,374,393,469,496,503,513,540,1272, vysytekkrirkdfgkrpqvldvpyllsiqldsfqkfieqdpegqygleaafrsvfpiqsysgnselqyvsyrlgepvfdvqecqirgvtysaplrvklrlviyereapegtvkdikeqevymgeiplmtdngtfvingteRvivsqlhrspgvffdsdkgkthssgkvlynariipyrgsWldfefdpkdnlfvridRrrklpatiilralnytteqildlffekvifeirdnklqmelvperlrgetasfdieangkvyvekgrritarhirqlekddvklievpveyiagkvvakdyidestgelicaanmelsldllaklsqsghkrietlftndldhgpyisetlrvdptndrlsalveiYrmmRpgEPptreaaeslfenlffsedRydlsavgrmkfnrsllreeiegsgilskddiidvmkklidirngkgevddidhlgnrrirsvgemaenqfrvglvRveravkerlslgdldtlmpqdminakPisaavkEffgssqlsqFmdqnnplseithkrrisalgpggltrEragfevrdvhpthygrvcpietpegpniglinslsvyaqtneygfletpyrkvtdgvvtdeihylsaieegnyviaqansnldeeghfvedlvtcrskgesslfsrdqvdymdvstqqvvsvgaslipflehddanralmganmqrqavptlradkplvgtgmeravavdsgvtavakrggvvqyvdasrivikvnedemypgeagidiynltkytrsnqntcinqmpcvslgepvergdvladgpstdlgelalgqnmrvafmpwngynfedsilvservvqedrfttihiqelacvsrdtklgpeeitadipnvgeaalskldesgivyigaevtggdilvgkvtpkgetqltpeekllraifgekasdvkdsslrvpngvsgtvidvqvftrdgvekdkraleieemqlkqakkdlseelqileaglfsriravlvaggveaekldklprdrwlelgltdeekqnqleqlaeqydelkhefekkleakrrkitqgddlapgvlkivkvylavkrriqpgdkmagrhgnkgviskinpiedmpydengtpvdivlnplgvpsrmnigqilethlgmaakgigdkinamlkqqqevaklrefiqraydlgadvrqkvdlstfsdeevmrlaenlrkgmpiatpvfdgakeaeikellklgdlptsgqirlydgrtgeqferpvtvgymymlklnhlvddkmharstgsyslvtqqplggkaqfggqrfgeMevwaleaygaaytlqemltvksddvngrtkmyknivdgnhqmepgmpesfnvllkeirslginielede > 7beg_D interface=306,307,413,776, eefdaikialaspdmirswsfgevkkpetinyrtfkperdglfcarifgpvkdyeclcgkykrlkhrgvicekcgvevtqtkvrrermghielasptahiwflkslpsrigllldmplrdiervlyfesyvvieggmtnlerqqilteeqyldaleefgdefdakmgaeaiqallksmdleqeceqlreelnetnsetkrkkltkriklleafvqsgnkpewmiltvlpvlppdlrplvpldggrfatsdlndlyrrvinrnnrlkrlldlaapdiivrnekrmlqeavdalldngrrgraitgsNKrplksladmikgkqgrfrqnllgkrvdysgrsvitvgpylrlhqcglpkkmalelfkpfiygklelrglattikaakkmvereeavvwdildevirehpvllnraPtlhrlgiqafepvliegkaiqlhplvcaaynadfdgdqmavhvpltleaqlearalmmstnnilspangepiivpsqdvvlglyymtrdcvnakgegmvltgpkeaerlyrsglaslharvkvriteyekdangelvaktslkdttvgrailwmivpkglpysivnqalgkkaiskmlntcyrilglkptvifadqimytgfayaarsgasvgiddmvipekkheiiseaeaevaeiqeqfqsglvtagerynkvidiwaaandrvskammdnlqtetvinrdgqeekqvsfnsiymmadsgargsaaqirqlagmrglmakpdgsiietpitanfreglnvlqyfisthgarkgladtalkTansgyltrrlvdvaqdlvvteddcgthegimmtpvieggdvkeplrdrvlgrvtaedvlkpgtadilvprntllheqwcdlleensvdavkvrsvvscdtdfgvcahcygrdlarghiinkgeaigviaaqsigepgtqltmrtfhiggaasraaaessiqvknkgsiklsnvksvvnssgklvitsrntelklidefgrtkesykvpygavlakgdgeqvaggetvanwdphtmpvitevsgfvrftdmidgqtitrqtdeltglsslvvldsaertaggkdlrpalkivdaqgndvlipgtdmpaqyflpgkaivqledgvqissgdtlaripqesggtkditgglprvadlfearrpkepailaeisgivsfgketkgkrrlvitpvdgsdpyeemipkwrqlnvfegervergdvisdgpeaphdilrlrgvhavtryivnevqdvyrlqgvkindkhievivrqmlrkativnagssdflegeqveysrvkianreleangkvgatysrdllgitkaslatesfisaasfqettrvlteaavagkrdelrglkenvivgrlipagtgyayhqdrmrrraag > 7beg_F interface=21,24,27,32,266,268,269,279,280,303,306,310,311,312,313,315,316,317,320,323,326,337,338,344,386,388,394,397,399,400,466,468,469, aaaqvlssveseigrttdpvRmyMreMgtveLltregeidiakriedginqvqcsvaeypeaitylleqydrveaeearlsdlitgfvdpnaesidpelarekfaelraqyvvtrdtikakgrshataqeeilklsevfkqfrlvpkqfdylvnsmrvmmdrvrtqerlimklcveqckmpkknfitlftgnetsdtwfnaaiamnkpwseklhdvseevhralqklqqieeetgltieqvkdinrrmsigeakarrakkemveaNlRLvisiakkytNRglqfldliqegniglmkavdkfEyrRgykFSTYaTWWirQaiTrsIadqartiripVHmietiNklnrisrqmlqemgreptpeelaermlmpedkirkvlkiakEpIsmetpIgdDeDShlgdfiedttlelpldsatteslraathdvlagltareakvlrmrfgidmntdytleevgkqfdvTrERirqieakalrklrhpsrsevlrsfldd > 7beg_G interface=92, tisaqvidtivewiddnlhqplriddiarhagyskwhlqrlflqykgeslgryirerklllaardlrdtdqrvydiclkygfdsqqtftvfTrtfnqppgayrke
interface signature	/RWRYREPRRPEFEM/NKPT/RMMLNRLNRERFSTYTWWQTIVHNEIIDDSTER/T

Estimated binding specificities ?

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# IC=23.092 IC/col=0.292 n_of_columns=79

specificity:

A |   0   0   5  10  24  96   0   0   0   0  96   0   0  10   0  96   0  24  24  96  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  96  80  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  81
C |   0   0   5  12  24   0   0   0  96   0   0   0   0  10   0   0  96  24  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   5  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   5
G |   0  96  80   5  24   0   0  96   0   0   0   0  96  64   0   0   0  24  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   6  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   5
T |  96   0   6  69  24   0  96   0   0  96   0  96   0  12  96   0   0  24  24   0  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   0   5  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24  24   5

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updated Tue Jan 6 20:37:38 2026