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structure nameCRYO-EM STRUCTURE OF AN ESCHERICHIA COLI RNAP-PROMOTER OPEN COMPLEX (RPO) WITH SSPA
sourceESCHERICHIA COLI / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12)
experimentNMR
structural superfamilyInsert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex3iyd_A 6psq_M 7c97_K 8y6u_I
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRSWDYREILREV/EDLSILRAIENG/VRMMLENRLYRERYSTYTWWRQTRVHRER/DDLRLH

Estimated binding specificities ?

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# IC=19.572 IC/col=0.576 n_of_columns=34 specificity:   
A |   0   0   0   0  24  96   9   0   0   0   0  24  24   0  96   0  73  24  73  24  24  24  24  24  24  24  24  24  24  24  24  24   7   0
C |  96  96   0   0  24   0   7  96  96   0   0  24  24   0   0   0   9  24   7  24  24  24  24  24  24  24  24  24  24  24  24  24   9  96
G |   0   0   0  96  24   0   7   0   0  96   0  24  24   0   0  96   7  24   7  24  24  24  24  24  24  24  24  24  24  24  24  24   7   0
T |   0   0  96   0  24   0  73   0   0   0  96  24  24  96   0   0   7  24   9  24  24  24  24  24  24  24  24  24  24  24  24  24  73   0
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updated Thu Jul 31 08:57:04 2025