interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF DNA-BOUND CCT/NF-YB/YC COMPLEX (HD1CCT/GHD8/OSNF- YC2)
(ZINC FINGER PROTEIN HD1)
referenceShen et al. 'Plant 32 3469 2020
sourceORYZA SATIVA JAPONICA GROUP
experimentX-ray (resolution=2.55, R-factor=0.201)
sequence familyCCT motif;
multimeric complexes7c9o_ABC
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRARRRF

Estimated binding specificities ?

readout + contactlogo
# IC=4.475 IC/col=0.895 n_of_columns=5 specificity:   
A |  13   0   0   0  13
C |  13   0   0   0  13
G |  13  96   0  96  54
T |  57   0  96   0  16
scan!

home
updated Sun Aug 3 15:45:36 2025