interface graph thumbnail
legend  pdf

structure nameCRYSTAL STRUCTURE OF DNA-BOUND CCT/NF-YB/YC COMPLEX (HD1CCT/GHD8/OSNF- YC2)
(ZINC FINGER PROTEIN HD1)
referenceShen et al. 'Plant 32 3469 2020
sourceORYZA SATIVA JAPONICA GROUP
experimentX-ray (resolution=2.55, R-factor=0.201)
sequence familyCCT motif;
multimeric complexes7c9o_ABC
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureRARRRF

Estimated binding specificities ?

readout + contactlogo
# IC=4.475 IC/col=0.895 n_of_columns=5 specificity:   
A |  13   0  96   0  54
C |  57  96   0  96  13
G |  13   0   0   0  16
T |  13   0   0   0  13
scan!

home
updated Wed Dec 18 08:18:40 2024