interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF DNA-BOUND CCT/NF-YB/YC COMPLEX (HD1CCT/GHD8/OSNF- YC2)
(NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11)
referenceShen et al. 'Plant 32 3469 2020
sourceORYZA SATIVA JAPONICA GROUP
experimentX-ray (resolution=2.55, R-factor=0.201)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/;
multimeric complexes7c9o_ABC
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  ----RA--           +-----------------------------6g0l_D    
                   +-7 
  --RT----       +-8 +-----------------------------8grq_A    
                 ! ! 
  LCRT----       ! +-----------------------------8hr1_E    
                 ! 
  --RT----       !                             +8u14_G    
               --9              +--------------1 
  --RG----       !              !              +5x0y_G    
                 !           +--4 
  --RA----       !           !  !             +1zla_C    
                 !           !  +-------------3 
  --RA--RA       +-----------6                +6a5l_g    
                             ! 
  --RG----                   !                 +8txv_G    
                             !  +--------------2 
  --RG----                   +--5              +8ox0_C    
                                ! 
  --RG----                      +--------------8jla_C

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updated Wed Dec 18 08:18:50 2024