interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF DNA-BOUND CCT/NF-YB/YC COMPLEX (HD1CCT/GHD8/OSNF- YC2)
(NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-11)
referenceShen et al. 'Plant 32 3469 2020
sourceORYZA SATIVA JAPONICA GROUP
experimentX-ray (resolution=2.55, R-factor=0.201)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/;
multimeric complexes7c9o_ABC
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  ----RA--           +-----------------------------7e9c_F    
                   +-6 
  ----RT--       +-7 +-----------------------------6px1_A    
                 ! ! 
  ----RC--       ! +-----------------------------7ux9_E    
                 ! 
  ----RG--     --8                             +8txv_G    
                 !          +------------------1 
  ----RG--       !          !                  +8upf_G    
                 !          ! 
  ----RT--       +----------5                 +8u14_G    
                            !       +---------3 
  ----RARA                  !       !         ! +6a5l_g    
                            +-------4         +-2 
  ----RC--                          !           +7yqk_C    
                                    ! 
  HGRTRG--                          +----------8rbx_V

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updated Sat Jan 10 14:29:57 2026