interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF DNA-BOUND CCT/NF-YB/YC COMPLEX (HD1CCT/GHD8/OSNF- YC2)
(NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-2)
referenceShen et al. 'Plant 32 3469 2020
sourceORYZA SATIVA JAPONICA GROUP
experimentX-ray (resolution=2.55, R-factor=0.201)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/; Core histone H2A/H2B/H3/H4;
multimeric complexes7c9o_ABC
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  --RG----                                    +8txv_G    
                                            +-1 
  --RA----                         +--------3 +1zla_C    
                                   !        ! 
  --RG----                      +--4        +5x0y_G    
                                !  ! 
  --RT----                      !  !         +8u14_G    
                         +------5  +---------2 
  --RG----               !      !            +8ox0_C    
                       +-6      ! 
  --RA--RA             ! !      +------------6a5l_g    
                     +-7 ! 
  ----RA--           ! ! +-------------------6g0l_D    
                 +---8 ! 
  --RT----       !   ! +---------------------8grq_A    
               --9   ! 
  LCRT----       !   +----------------------8hr1_E    
                 ! 
  --RG----       +--------------------------8jla_C

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updated Wed Dec 18 08:19:32 2024