interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF DNA-BOUND CCT/NF-YB/YC COMPLEX (HD1CCT/GHD8/OSNF- YC2)
(NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-2)
referenceShen et al. 'Plant 32 3469 2020
sourceORYZA SATIVA JAPONICA GROUP
experimentX-ray (resolution=2.55, R-factor=0.201)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/; Core histone H2A/H2B/H3/H4;
multimeric complexes7c9o_ABC
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  --RT--                                 +8u14_G    
                          +--------------1 
  --RG--                  !              +8upf_G    
                        +-4 
  --RG--                ! !             +8txv_G    
                        ! +-------------3 
  --RC--            +---5               +7yqk_C    
                    !   ! 
  --RARA            !   !              +6a5l_g    
                 +--6   +--------------2 
  HGRG--         !  !                  +8rbx_V    
               +-7  ! 
  --RA--       ! !  +------------------7e9c_F    
             --8 ! 
  --RC--       ! +---------------------7ux9_E    
               ! 
  --RT--       +----------------------6px1_A

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updated Sat Jan 10 14:30:41 2026