interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF DNA-BOUND CCT/NF-YB/YC COMPLEX (HD1CCT/GHD8/OSNF- YC2)
(NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-2)
referenceShen et al. 'Plant 32 3469 2020
sourceORYZA SATIVA JAPONICA GROUP
experimentX-ray (resolution=2.55, R-factor=0.201)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/; Core histone H2A/H2B/H3/H4;
multimeric complexes7c9o_ABC
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  --RG----       +-----------------------------8ox0_C    
                 ! 
  --RG----       !                                +8txv_G    
                 !                              +-1 
  --RA----       !                    +---------3 +1zla_C    
                 !                    !         ! 
  --RA--RA       !            +-------4         +6a5l_g    
               --9            !       ! 
  --RT----       !            !       !         +8u14_G    
                 !          +-5       +---------2 
  --RG----       !          ! !                 +5x0y_G    
                 !        +-6 ! 
  ----RA--       !        ! ! +-----------------6g0l_D    
                 !      +-7 ! 
  --RG----       !      ! ! +-------------------8jla_C    
                 +------8 ! 
  --RT----              ! +---------------------8grq_A    
                        ! 
  LCRT----              +----------------------8hr1_E    
               

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updated Sun Aug 3 15:46:17 2025