7cc9_A : 3D-footprint complex

structure name	SULFUR BINDING DOMAIN OF SPRMCRA COMPLEXED WITH PHOSPHOROTHIOATED DNA (HNHc domain-containing protein)
reference	Zhao et al. 'Nucleic 48 8755 2020
source	Streptomyces pristinaespiralis
experiment	X-ray (resolution=2.06, R-factor=0.212)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7cc9_A interface=18,20,71,76,100,102,103, ltdtdrsedflrrvrglKaArtangprlyqpitllwavgrarrgeartlawadtdeaigallkrhgargeRprpdYpvlalhraglwtleghvgevptaHgDSalrnwfaeqrpvgglaepfhdllhrsghsrvsvieallttyfagldpvplledtglydeg
interface signature	KARYHDS

Estimated binding specificities ?

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# IC=5.582 IC/col=0.797 n_of_columns=7

specificity:

A |  12   0   0  24  12   0   0
C |  12  96   0  24  60  96  84
G |  60   0  96  24  12   0   0
T |  12   0   0  24  12   0  12

scan!

Dendrogram of similar interfaces ?

matrix format

  
  KCAG----RC------YC----------------HGDCSG--   L                               +--7cc9_A    
                                                           +-------------------3 
  ----------------YC--------------TG--------               !                   +--5zmo_A    
                                                           ! 
  ----------------NAST--HTST----------------   L         +-6                      +3g73_A    
                                                         ! !           +----------1 
  --------------NAST--RGHTSTLT--------------   L         ! !    +------4          +7cby_C    
                                                         ! !    !      ! 
  ----------------------------DARG--------YG   L         ! +----5      +----------5vfx_A    
                                                     +---7      ! 
  --------------NAST--RGHTSTFT--------------   L     !   !      !                +5x07_F    
                                                     !   !      +----------------2 
  --------------NAST--RGHTSTFT--------------   L   +-8   !                       +1vtn_C    
                                                   ! !   ! 
  --------YAQTTC--QC------------------------   L   ! !   +------------------------5k5q_D    
                                                 --9 ! 
  ----YA----PG--YTRG------------------------   L   ! +----------------------------4mte_D    
                                                   ! 
  ------RGRGMCTTRT--------------------------   L   +----------------------------4u0y_B

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updated Sat Sep 14 02:02:06 2024