7ckq_CDFGI : 3D-footprint complex

structure name	THE CRYO-EM STRUCTURE OF B. SUBTILIS BMRR TRANSCRIPTION ACTIVATION COMPLEX
source	BACILLUS SUBTILIS (STRAIN 168) / BACILLUS SUBTILIS (STRAIN 168) / BACILLUS SUBTILIS (STRAIN 168) / BACILLUS SUBTILIS (STRAIN 168) / BACILLUS SUBTILIS (STRAIN 168) / BACILLUS SUBTILIS (STRAIN 168) / BACILLUS SUBTILIS (STRAIN 168) / BACILLUS SUBTILIS (STRAIN 168) / BACILLUS SUBTILIS (STRAIN 168) / BACILLUS SUBTILIS (STRAIN 168)
experiment	NMR
structural superfamily	Probable bacterial effector-binding domain;Putative DNA-binding domain;
reference complex	1r8e_A 7ckq_G
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7ckq_C interface=236,239,240,353, vqygrhrqrrsyarisevlelpnlieiqtssyqwfldeglremfqdispiedftgnlslefidyslgepkypveeskerdvtysaplrvkvrlinketgevkdqdvfmgdfpimtdtgtfiingaervivsqlvrspsvyfsgkvdkngkkgftatvipnrgawleyetdakdvvyvridrtrklpvtvllralgfgsdqeildligeneylrntldkdntensdkalleiyerlRpgEPptvenakslldsrffdpkrydlanvgrykinkklhiknrlfnqyieeeiknitpadiissisyffnllhgvgdtddidhlgnrrlrsvgellqnqfriglsrmervvrermsIqdtntitpqqlinirpviasikeffgssqlsqfmdqtnplaelthkrrlsalgpggltreragmevrdvhyshygrmcpietpegpniglinslssyakvnrfgfietpyrrvdpetgkvtgridyltadeednyvvaqanarlddegafiddsivarfrgentvvsrnrvdymdvspkqvvsaatacipflenddsnralmganmqrqavplmqpeapfvgtgmeyvsgkdsgaavickhpgiverveaknvwvrryeevdgqkvkgnldkysllkfvrsnqgtcynqrpivsvgdevvkgeiladgpsmelgelalgrnvmvgfmtwdgynyedaiimserlvkddvytsihieeyeseardtklgpeeitrdipnvgedalrnlddrgiirigaevkdgdllvgkvtpkgvteltaeerllhaifgekarevrdtslrvphggggiihdvkvfnredgdelppgvnqlvrvyivqkrkisegdkmagrhgnkgviskilpeedmpylpdgtpidimlnplgvpsrmnigqvlelhmgmaarylgihiaspvfdgareedvwetleeagmsrdaktvlydgrtgepfdnrvsvgimymiklahmvddklharstgpyslvtqqplggkaqfggqrfgemevwaleaygaaytlqeiltvksddvvgrvktyeaivkgdnvpepgvpesfkvlikelqslgmdvkil > 7ckq_D interface=297, feymniglaspdkirswsfgevkkpetinyrtlkpekdglfcerifgptkdwechcgkykrvrykgvvcdrcgvevtrakvrrermghielaapvshiwyfkgipsrmglvldmspraleeviyfasyvvtdpantplekkqllsekeyrayldkygnkfqasmgaeaihkllqdidlvkevdmlkeelktsqgqrrtraikrlevleafrnsgnkpswmildvlpvippelrpmvqldggrfatsdlndlyrrvinrnnrlkrlldlgapsiivqnekrmlqeavdalidngrrgRpvtgpgnrplkslshmlkgkqgrfrqnllgkrvdysgrsvivvgphlkmyqcglpkemalelfkpfvmkelvekglahniksakrkiervqpevwdvlesvikehpvllnraptlhrlgiqafeptlvegrairlhplvctaynadfdgdqmavhvplsaeaqaearilmlaaqnilnpkdgkpvvtpsqdmvlgnyyltleragavgegmvfkntdeallayqngyvhlhtrvavaanslqrskllittvgklvfneilpesfpymneptksnieedvkaviaqqpinapfkkgilgkiiaeifkrfhitetskmldrmknlgfkystkagitvgvsdivvlddkqeileeaqskvdnvmkqfrrgliteeeryervisiwsaakdviqgklmksldelnpiymmsdsgargnasnftqlagmrglmanpagriielpikssfregltvleyfisthgarkgladtalktadsgyltrrlvdvaqdviiretdcgtdrgilakplkegtetierleerligrfarkqvkhpetgevlvnenelidedkaleiveagieevwirsaftcntphgvckrcygrnlatgsdvevgeavgiiaaqsigepgtqltglpriqelfearnpatiteidgtvveinevrdkqqeivvqgavetrsytapynsrlkvaegdkitrgqvltegsidpkellkvtdlttvqeyllhevqkvyrmqgveigdkhvevmvrqmlrkvrvgdtdvlpgtlldihqfteankkvllegnrpatgrpvllgitkasletdsflsaasfqettrvltdaaikgkrdellglkenviigklvpagtgmmkyrkvkp > 7ckq_F interface=3,7,16,21,42,45,46,50,79,82,86,87,89,90,92,93,94,96,97,100,101,114,115,234,245,246,248,249, dpVrmyLkeigrvnlLsakeEiayaqkieegdeeskrrlaeAnlRLvvsIakryvgrgmlfldliqegnmglmkavekFdyRkgyKFsTYaTWWiRQaiTRaiadqartiripVHmvetinklirvqrqllqdlgreptpeeiaedmdltpekvreilkiaqepvsletpigeeddshlgdfiedqeatspsdhaayellkeqledvldtltdreenvlrlrfglddgrtrtlEevgkvfgvtrERiRQieakalrklrhpsrskrlkdfle > 7ckq_G interface=19,22,23,41,42, kesyysigevsklanvsiKalRYydkidlfkpayvdpdtsYRyytdsqlihldlikslkyigtpleemkkaqdlemeelfafyteqerqirekldflsaleqtislvkkrmkrqmeypalgevfvldeeeiriiqteaegigpenvlnasysklkkfiesadgftnnsygatfsfqpytsidemtyrhiftpvltnkqissitpdmeittipkgryaciaynfspehyflnlqklikyiadrqltvvsdvyeliipihyspkkqeeyrvemkiria > 7ckq_I interface=19,22,23,41,42, kesyysigevsklanvsiKalRYydkidlfkpayvdpdtsYRyytdsqlihldlikslkyigtpleemkkaqdlemeelfafyteqerqirekldflsaleqtislvkkrmkrqmeypalgevfvldeeeiriiqteaegigpenvlnasysklkkfiesadgftnnsygatfsfqpytsidemtyrhiftpvltnkqissitpdmeittipkgryaciaynfspehyflnlqklikyiadrqltvvsdvyeliipihyspkkqeeyrvemkiria
interface signature	REPI/R/VLLEARLIFRKFTYTWWRQTRVHEERRQ/KRYYR/KRYYR

Estimated binding specificities ?

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# IC=33.706 IC/col=0.963 n_of_columns=35

specificity:

A |   2   2  96   0   0   0   0   6  24  96  96  96  89   0   0   2   6   0   0  24   0  24  76   2   0   0  24  90  24  76  24   2   0  96  96
C |   2  89   0   0  96  96   0   8  24   0   0   0   2  96  96   3  76  96   0  24  96  24   6   3   0   0  24   2  24   8  24   2  96   0   0
G |  89   2   0   0   0   0  96   6  24   0   0   0   3   0   0   2   6   0   0  24   0  24   8  89  96  96  24   2  24   6  24   3   0   0   0
T |   3   3   0  96   0   0   0  76  24   0   0   0   2   0   0  89   8   0  96  24   0  24   6   2   0   0  24   2  24   6  24  89   0   0   0

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updated Wed Sep 11 03:23:49 2024