interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF ARABIDOPSIS CO CCT DOMAIN IN COMPLEX WITH NF- YB3/YC4 AND FT CORE2 DNA
(CHIMERA OF NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 AND...)
referenceLv et al. 'Plant 33 1182 2021
sourceARABIDOPSIS THALIANA
experimentX-ray (resolution=2.60, R-factor=0.197)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/; CCT motif; Core histone H2A/H2B/H3/H4;
multimeric complexes7cvo_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RG--RG                                +8kcb_A    
                                        +-1 
  --RA----                     +--------3 +1zla_C    
                               !        ! 
  --RA--RA                   +-5        +6a5l_g    
                             ! ! 
  --RG----                   ! !         +8txv_G    
                          +--7 +---------2 
  --RG----                !  !           +8ox0_C    
                 +--------8  ! 
  --RG----       !        !  +-----------5x0y_G    
                 !        ! 
  --RG----       !        +--------------8jla_C    
               -10  
  --RT----       !            +----------8u14_G    
                 !   +--------6 
  ----RA--       !   !        +----------6g0l_D    
                 +---9 
  LC------           !                  +8bvw_e    
                     +------------------4 
  LCRT----                              +8hr1_E    
               

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updated Sun Aug 3 15:52:28 2025