interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF ARABIDOPSIS CO CCT DOMAIN IN COMPLEX WITH NF- YB3/YC4 AND FT CORE2 DNA
(CHIMERA OF NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 AND...)
referenceLv et al. 'Plant 33 1182 2021
sourceARABIDOPSIS THALIANA
experimentX-ray (resolution=2.60, R-factor=0.197)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/; CCT motif; Core histone H2A/H2B/H3/H4;
multimeric complexes7cvo_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RG--RG                                 +8kcb_A    
                            +--------------1 
  --RG----                +-6              +8jla_C    
                          ! ! 
  --RG----             +--7 +--------------8ox0_C    
                       !  ! 
  --RG----             !  !              +8txv_G    
                 +-----8  +--------------2 
  --RG----       !     !                 +5x0y_G    
                 !     ! 
  --RA----       !     !                 +1zla_C    
                 !     +-----------------3 
  --RA--RA     -10                       +6a5l_g    
                 !  
  --RT----       !             +---------8u14_G    
                 !     +-------5 
  ----RA--       !     !       +---------6g0l_D    
                 +-----9 
  LC------             !                +8bvw_e    
                       +----------------4 
  LCRT----                              +8hr1_E    
               

home
updated Wed Dec 18 08:25:56 2024