interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF ARABIDOPSIS CO CCT DOMAIN IN COMPLEX WITH NF- YB3/YC4 AND FT CORE2 DNA
(NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3)
referenceLv et al. 'Plant 33 1182 2021
sourceARABIDOPSIS THALIANA
experimentX-ray (resolution=2.60, R-factor=0.197)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/;
multimeric complexes7cvo_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ----RA--                  +------------------6g0l_D    
                        +---6 
  LC------              !   !                 +8bvw_e    
                        !   +-----------------3 
  LCRT----              !                     +8hr1_E    
                        ! 
  --RA--RA         +----8                        +6a5l_g    
                   !    !         +--------------1 
  --RG----         !    !         !              +8txv_G    
                   !    ! +-------5 
  --RA----         !    ! !       !              +1zla_C    
                   !    ! !       +--------------2 
  --RG----       +-9    +-7                      +8ox0_C    
                 ! !      ! 
  --RT----       ! !      !                     +8u14_G    
                 ! !      +---------------------4 
  --RG----     -10 !                            +8jla_C    
                 ! ! 
  --RG----       ! +---------------------------5x0y_G    
                 !  
  --RT----       +-----------------------------8grq_A    
               

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updated Sun Aug 3 15:53:12 2025