interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF ARABIDOPSIS CO CCT DOMAIN IN COMPLEX WITH NF- YB3/YC4 AND FT CORE2 DNA
(NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-3)
referenceLv et al. 'Plant 33 1182 2021
sourceARABIDOPSIS THALIANA
experimentX-ray (resolution=2.60, R-factor=0.197)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/;
multimeric complexes7cvo_AB
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ----RA--               +-------------------6g0l_D    
                         ! 
  LC------          +----6                   +8bvw_e    
                    !    !    +--------------1 
  --RT----          !    +----5              +8grq_A    
                    !         ! 
  LCRT----          !         +--------------8hr1_E    
                    ! 
  --RA----       +--9                         +1zla_C    
                 !  !   +---------------------3 
  --RA--RA       !  !   !                     +6a5l_g    
                 !  ! +-7 
  --RG----       !  ! ! !                      +8txv_G    
                 !  ! ! +----------------------2 
  --RG----     -10  +-8                        +8ox0_C    
                 !    ! 
  --RT----       !    !                     +8u14_G    
                 !    +---------------------4 
  --RG----       !                          +8jla_C    
                 !  
  --RG----       +---------------------------5x0y_G    
               

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updated Wed Dec 18 08:26:46 2024