interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF ARABIDOPSIS CO CCT DOMAIN IN COMPLEX WITH NF- YB2/YC3 AND FT CORE1 DNA
(CHIMERA OF NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 AND...)
referenceLv et al. 'Plant 33 1182 2021
sourceARABIDOPSIS THALIANA
experimentX-ray (resolution=3.30, R-factor=0.242)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/; CCT motif; Core histone H2A/H2B/H3/H4;
multimeric complexes7cvq_AB 7cvq_KL 7cvq_PQ
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --------RT                                           +1u35_G    
                         +-----------------------------1 
  --------RT           +-5                             +7lyb_G    
                       ! ! 
  --------RA         +-6 +-----------------------------6t7a_C    
                     ! ! 
  --------RT         ! +-----------------------------7lya_E    
                     ! 
  ----IT--RA       +-7                            +7k78_E    
                   ! !             +--------------2 
  --------RT       ! !       +-----3              +7wlr_E    
                   ! !       !     ! 
  --------RT     --8 +-------4     +---------------7zs9_e    
                   !         ! 
  --RAETRT--       !         +---------------------4ne1_p    
                   ! 
  RT--------       +-----------------------------7v9c_H    
                 

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updated Tue Dec 19 17:52:50 2023