interface graph thumbnail
legend  pdf

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYSTAL STRUCTURE OF ARABIDOPSIS CO CCT DOMAIN IN COMPLEX WITH NF- YB2/YC3 AND FT CORE1 DNA
(CHIMERA OF NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 AND...)
referenceLv et al. 'Plant 33 1182 2021
sourceARABIDOPSIS THALIANA
experimentX-ray (resolution=3.30, R-factor=0.242)
structural superfamilyHistone-fold;
sequence familyHistonelike transcription factor CBF/; CCT motif; Core histone H2A/H2B/H3/H4;
multimeric complexes7cvq_AB 7cvq_KL 7cvq_PQ
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ----RA--RA         +-----------------------------6a5l_g    
                     ! 
  ----RT----         !                             +8u14_G    
                     !           +-----------------1 
  ----RG----         !           !                 +8ox0_C    
                     !        +--5 
  ----RA----       +-8        !  !      +----------1zla_C    
                   ! !        !  +------3 
  --LCRT----       ! !     +--6         +----------8hr1_E    
                   ! !     !  ! 
  ----RG----       ! !     !  !                    +8txv_G    
                   ! !     !  !     +--------------2 
  ----RG----     --9 +-----7  +-----4              +5x0y_G    
                   !       !        ! 
  ----RG----       !       !        +--------------8jla_C    
                   !       ! 
  ------RA--       !       +-----------------------6g0l_D    
                   ! 
  RT--------       +-----------------------------9fgq_D    
                 

home
updated Wed Dec 18 08:27:34 2024