7d3j_A : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF THE CAS12I1 R-LOOP COMPLEX AFTER TARGET DNA CLEAVAGE (12I1-WT)
reference	OuYang et al. 'Nat 12 3476 2021
source	LACHNOSPIRACEAE BACTERIUM ND2006
experiment	X-ray (resolution=2.45, R-factor=0.222)
reference complex	7eu9_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7d3j_A interface=162,164,165,168,228,230,292,475,476, nasetrkayttkmiprshdrmkllgnfmdylmdgtpiffelwnqfgggidrdiisgtankdkisddlllavnwfkvmpinskpqgvspsnlanlfqqysgsepdiqaqeyfasnfdtekhqwkdmrveyerllaelqlsrsdmhhdlklmykekciglslsTaHYitSvmfgtgaknnrqtkhqfyskviqlleestqinsveqlasiilkagdcdsyrklrircsrKgAtpsilkivqdyelgtnhddevnvpslianlkeklgrfeyecewkcmekikaflaskvgpyyLgsysamlenalspikgmttknckfvlkqidakndikyenepfgkivegffdspyfesdtnvkwvlhphhigesniktlwedlnaihskyeediaslsedkkekrikvyqgdvcqtintyceevgkeaktplvqllrylysrkddiavdkiidgitflskkhkvekqkinpviqkypsfnfgnNSkllgkiispkdklkhnlkcnrnqvdnyiwieikvlntktmrwekhhyalsstrfleevyypatsenppdalaarfrtktngyegkpalsaeqieqirsapvglrkvkkrqmrleaarqqnllprytwgkdfninickrgnnfevtlatkvkkkkeknykvvlgydanivrkntyaaieahangdgvidyndlpvkpiesgfvtvesqvrdksydqlsyngvkllyckphvesrrsflekyrngtmkdnrgnniqidfmkdfeaiaddetslyyfnmkyckllqssirnhssqakeyreeifellrdgklsvlklsslsnlsfvmfkvaksligtyfghllkkpappitdedkqkadpemfalrlaleekrlnkvkskkeviankivakalelrdkygpvlikgenisdttkkgkksstnsflmdwlargvankvkemvmmhqglefvevnpnftshqdpfvhknpentfrarysrctpselteknrkeilsflsdkpskrptnayynegamaflatyglkkndvlgvslekfkqimanilhqrsedqllfpsrggmfylatykldadatsvnwngkqfwvcnadlvaaynvglvdiqkdfk
interface signature	THYSKALNS

Estimated binding specificities ?

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# IC=3.420 IC/col=0.855 n_of_columns=4

specificity:

A |  22   0   1   0
C |  22   0   5  83
G |  43   1   0   1
T |   9  95  90  12

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updated Tue Dec 17 08:57:18 2024