7d69_B : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	CRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES (HISTONE H4)
source	GIARDIA INTESTINALIS
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	7d69_ABCDEFGH
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7d69_B interface=12, dtlggitkpaiRrlarrggvkrisstiyqqtrevlkaflevvlrdsltytehgqrktvtsqdvvyalkrqgrtlygfg

  
  --RG----                                +8txv_G    
                           +--------------1 
  --RG----         +-------5              +8ox0_C    
                   !       ! 
  --RA--RA         !       +--------------6a5l_g    
                   ! 
  --RA----       +-9            +---------1zla_C    
                 ! !  +---------4 
  ----RA--       ! !  !         +---------6g0l_D    
                 ! +--8 
  LC------       !    !                   +8bvw_e    
                 !    !    +--------------3 
  --RT----     -10    +----6              +8grq_A    
                 !         ! 
  LCRT----       !         +--------------8hr1_E    
                 !  
  --RT----       !                      +8u14_G    
                 !       +--------------2 
  --RG----       +-------7              +5x0y_G    
                         ! 
  --RG----               +--------------8jla_C

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updated Wed Dec 18 08:30:14 2024