Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameCRYO-EM STRUCTURE OF THE NUCLEOSOME CONTAINING GIARDIA HISTONES
(HISTONE H3)
sourceGIARDIA INTESTINALIS
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes7d69_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RT----       +-----------------------------8grq_A    
                 !  
  LC------       !                             +8bvw_e    
                 !          +------------------3 
  LCRT----       !       +--5                  +8hr1_E    
                 !       !  ! 
  ----RA--       !     +-7  +-------------------6g0l_D    
               -10     ! ! 
  --RG----       !     ! +----------------------8jla_C    
                 !     ! 
  --RA----       ! +---8                       +1zla_C    
                 ! !   !        +--------------2 
  --RG----       ! !   !   +----4              +8ox0_C    
                 ! !   !   !    ! 
  --RA--RA       ! !   +---6    +--------------6a5l_g    
                 +-9       ! 
  --RT----         !       !                   +8u14_G    
                   !       +-------------------1 
  --RG----         !                           +5x0y_G    
                   ! 
  --RG----         +---------------------------8txv_G

home
updated Wed Dec 18 08:33:04 2024