3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameTHE MOUSE NUCLEOSOME STRUCTURE CONTAINING H3MM18
(HISTONE H3MM18)
sourceMUS MUSCULUS
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes7dbh_ABCDEFGH 7vbm_ABCDEFGH
redundant complexes7vbm_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  ------RT                           +---------7wlr_E    
                           +---------2 
  ------RT         +-------4         +---------7lyb_G    
                   !       ! 
  ------RT         !       +-------------------7zs9_e    
                   ! 
  --IT--RA       +-6                    +------7k78_E    
                 ! !       +------------1 
  RAETRT--       ! !    +--3            +------4ne1_p    
                 ! !    !  ! 
  ------RT     --7 +----5  +-------------------1u35_G    
                 !      ! 
  ------RA       !      +----------------------6t7a_C    
                 ! 
  ------RT       +-----------------------------7lya_E

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updated Sat Sep 14 02:15:50 2024