3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameTHE MOUSE NUCLEOSOME STRUCTURE CONTAINING H3MM18
(HISTONE H3MM18)
sourceMUS MUSCULUS
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes7dbh_ABCDEFGH 7vbm_ABCDEFGH
redundant complexes7vbm_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  LCRT----                 +-----------------------------8hr1_E    
                         +-4 
  --RT----             +-5 +-----------------------------8grq_A    
                       ! ! 
  --RA--RA           +-6 +-----------------------------6a5l_g    
                     ! ! 
  --RG----         +-7 +-----------------------------8ox0_C    
                   ! ! 
  --RG----       +-8 +-----------------------------5x0y_G    
                 ! ! 
  --RG----       ! +-----------------------------8jla_C    
                 ! 
  --RA----     --9                   +---------1zla_C    
                 !         +---------1 
  ----RA--       !      +--2         +---------6g0l_D    
                 !      !  ! 
  --RG----       +------3  +-------------------8txv_G    
                        ! 
  --RT----              +----------------------8u14_G

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updated Wed Dec 18 08:37:16 2024