3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameTHE MOUSE NUCLEOSOME STRUCTURE CONTAINING H3MM18
(HISTONE H3MM18)
sourceMUS MUSCULUS
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes7dbh_ABCDEFGH 7vbm_ABCDEFGH
redundant complexes7vbm_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB 
  
  --RT----         +-----------------------------8grq_A    
                 +-8 
  LCRT----       ! +-----------------------------8hr1_E    
                 ! 
  --RA--RA       !                             +6a5l_g    
                 !              +--------------1 
  --RG----     --9     +--------4              +8txv_G    
                 !     !        ! 
  --RG----       !  +--6        +--------------8jla_C    
                 !  !  ! 
  --RT----       !  !  !             +---------8u14_G    
                 !  !  +-------------3 
  ----RA--       +--7                +---------6g0l_D    
                    ! 
  --RA----          !                          +1zla_C    
                    !           +--------------2 
  --RG----          +-----------5              +8ox0_C    
                                ! 
  --RG----                      +--------------5x0y_G

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updated Sun Aug 3 16:02:43 2025