3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameTHE MOUSE NUCLEOSOME STRUCTURE CONTAINING H3MM18
(HISTONE H3MM18)
sourceMUS MUSCULUS
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes7dbh_ABCDEFGH 7vbm_ABCDEFGH
redundant complexes7vbm_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
  
  ------RC--           +-----------------------------7ux9_E    
                     +-7 
  ------RT--         ! +-----------------------------6px1_A    
                     ! 
  ------RARA         !                               +6a5l_g    
                     !                +--------------1 
  ------RG--         !                !              +8upf_G    
                   +-8            +---4 
  ------RG--       ! !            !   !             +8txv_G    
                   ! !            !   +-------------3 
  --HGRTRG--       ! !          +-5                 +8rbx_V    
                   ! !          ! ! 
  ------RT--     --9 !          ! !                 +8u14_G    
                   ! +----------6 +-----------------2 
  ------RC--       !            !                   +7yqk_C    
                   !            ! 
  ------RA--       !            +------------------7e9c_F    
                   ! 
  RG--------       +-----------------------------7ccr_H    
                 

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updated Sat Jan 10 14:51:37 2026