7dcs_DEF : 3D-footprint complex

structure name	CRYSTAL STRUCTURE OF HSF1 DNA-BINDING DOMAIN IN COMPLEX WITH 3-SITE HSE DNA (23 BP)
reference	Feng et al. Iscience 24 102951 2021
source	HOMO SAPIENS
experiment	X-ray (resolution=2.40, R-factor=?)
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7dcs_D interface=55,57,58,59,61,93, hvpafltklwtlvsdpdtdalicwspsgnsfhvfdqgqfakevlpkyfkhnnmaSfVRQlNmygfrkvvhidtefqhpcflrgqeqllenikRkv > 7dcs_E interface=54,56,57,58,60,61,103, vpafltklwtlvsdpdtdalicwspsgnsfhvfdqgqfakevlpkyfkhnnmaSfVRQlNMygfrkvvhieqgglvkperddtefqhpcflrgqeqllenikRkv > 7dcs_F interface=54,57,58,60,91, vpafltklwtlvsdpdtdalicwspsgnsfhvfdqgqfakevlpkyfkhnnmaSfvRQlNmygfrkvvhdtefqhpcflrgqeqllenikRkv
interface signature	SVRQNR/SVRQNMR/SRQNR

Estimated binding specificities ?

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# IC=14.886 IC/col=0.930 n_of_columns=16

specificity:

A |   5   4   4   0   0  96   0  83  24   4  96  24   4   0   0  92
C |   8  12   4  96   0   0   0   4  24   8   0  24   0  96   0   4
G |  75   8   5   0   0   0  96   5  24  12   0  24   4   0  96   0
T |   8  72  83   0  96   0   0   4  24  72   0  24  88   0   0   0

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updated Sun Dec 15 04:16:37 2024