Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameHUMAN SETD2 BOUND TO A NUCLEOSOME CONTAINING ONCOHISTONE MUTATIONS
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes7ea8_ABCDEFGH
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  --RG--------RG------                +-----------------------------6iy2_A    
                                      !  
  --RT--RG------------                !                                 +6pww_K    
                                      !        +------------------------1 
  --RG--------RT------                !        !                        +8grq_A    
                                      !        !  
  --RG--------RT------                !        !          +--------------7zs9_e    
                                      !     +-16  +------10  
  --RT----LA--RG------                !     !  !  !       !             +7unc_a    
                                      !     !  !  !       +-------------2 
  --RG----LC--RT------                !     !  !  !                     +8hr1_E    
                                      !     !  +-15  
  HGRGYG--QC--RG------                !     !     !  +-------------------7y7i_E    
                                      !     !     !  !  
  --RCYA------RG------             +-19     !     !  !            +--------7ccr_A    
                                   !  !     !     +-14  +---------8 
  ------------RG------             !  !     !        !  !         +--------8ox0_C    
                                   !  !     !        !  !  
  --------LT----------             !  !     !        +-13               +-----7ywx_E    
                                   !  !     !           !  +------------6 
  --------------RA----             !  !     !           !  !            +-----6g0l_D    
                                   !  !  +-17           !  !  
  --------EA----RG----             !  !  !  !           +-12        +---------7n8n_A    
                                   !  !  !  !              !   +----9 
  ------------RG------             !  !  !  !              !   !    +---------5x0y_G    
                                   !  !  !  !              !   !  
  ------------RC------             !  !  !  !              +--11              +7xyf_B    
                                +-20  !  !  !                  !            +-4 
  ----------------KG--          !  !  !  !  !                  !       +----5 +7nkx_f    
                                !  !  +-18  !                  !       !    ! 
  ------------RG------          !  !     !  !                  +-------7    +-8jla_C    
                                !  !     !  !                          ! 
  ------------RA------          !  !     !  !                          !     +1zla_C    
                                !  !     !  !                          +-----3 
  ------------RA----RA       +-21  !     !  !                                +6a5l_g    
                             !  !  !     !  !  
  ------------RT------       !  !  !     !  +---------------------------7kbd_C    
                             !  !  !     !  
  ----------IT--------       !  !  !     +----------------------------3wkj_D    
                           -22  !  !  
  --RG----------------       !  !  +-----------------------------5z3u_A    
                             !  !  
  HARA----LT--RC------       !  +-----------------------------3kwq_E    
                             !  
  HARAYT--LT--RC------       +-----------------------------4xzq_E    
                           

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updated Wed Dec 18 08:50:21 2024