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structure nameSOLUTION NMR STRUCTURE OF THE L22V MUTANT DNA BINDING DOMAIN OF AREA COMPLEXED TO A 13 BP DNA CONTAINING A TGATA SITE, 34 STRUCTURES
(NITROGEN REGULATORY PROTEIN AREA)
sourceEMERICELLA NIDULANS
experimentNMR
structural superfamilyGlucocorticoid receptor-like DNA-binding domain;
sequence familyGATA zinc finger;
redundant complexes6gat 5gat 4gat
reference complex4gat_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureVRLLR

Estimated binding specificities ?

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# IC=3.101 IC/col=0.775 n_of_columns=4 specificity:   
A |  54  13   0  96
C |  16  13  96   0
G |  13  16   0   0
T |  13  54   0   0
scan!

Related DNA sequences reported in the literature ?


sitesourcematches (E-value)
term: AREA
CGATAGAGAGATAAPubMed5gat_A(1.03e-02)
term: CGATA
CGATAPubMed5gat_A(1.38e-04)
CAATCAPubMed7gat_A(3.65e-04), 6gat_A(8.76e-07)

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updated Fri Sep 13 04:05:26 2024