7jy8_GHI : 3D-footprint complex

structure name	ANALYSIS OF A STRAND EXCHANGE REACTION WITH A MINI FILAMENT OF 9- RECA, 27-MER SSDNA, PARTIALLY-HOMOLOGOUS 67 BP DSDNA AND ATPGAMMAS
reference	Nature 586 801 2020 C10 H16 N5 O12 P3 S
source	Escherichia coli
experiment	X-ray (resolution=2.50, R-factor=?)
structural superfamily	P-loop containing nucleoside triphosphate hydrolases;RecA protein, C-terminal domain;
reference complex	8trg_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7jy8_G interface=169,197,198,199, aidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmgriveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqpdtgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmglaaRmmsqamrklagnlkqsntllifinqirMKIgvmfgnpetttggnalkfyasvrldirrigavkegenvvgsetrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekigqgkanatawlkdnpetakeiekkvrelllsnpns > 7jy8_H interface=169,198,199, aidenkqkalaaalgqiekqfgkgsimrlgedrsmdvetistgslsldialgagglpmgriveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqpdtgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmglaaRmmsqamrklagnlkqsntllifinqirmKIgvmfgnpetttggnalkfyasvrldirrigavkegenvvgsetrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekigqgkanatawlkdnpetakeiekkvrelllsnpns > 7jy8_I interface=165,166, smdvetistgslsldialgagglpmgriveiygpessgkttltlqviaaaqregktcafidaehaldpiyarklgvdidnllcsqpdtgeqaleicdalarsgavdvivvdsvaaltpkaeiegeigdshmglaarmmsqamrklagnlkqsntllifinqirmKIgvmfgnpetttggnalkfyasvrldirrigavkegenvvgsetrvkvvknkiaapfkqaefqilygeginfygelvdlgvkekliekagawysykgekigqgkanatawlkdnpetakeiekkvrelllsnpns
interface signature	RMKI/RKI/KI

Estimated binding specificities ?

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# IC=8.518 IC/col=0.946 n_of_columns=9

specificity:

A |  12   0   0  14   0   0  24   0   0
C |  12   0   0  14   0   0  24   0   0
G |  12   0   0  14   0   0  24   0   0
T |  60  96  96  54  96  96  24  96  96

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updated Wed Sep 11 06:23:47 2024