interface graph thumbnail
legend  pdf

structure nameSTRUCTURE OF A 9 BASE PAIR RECA-D LOOP COMPLEX
referenceNature 586 801 2020 C10 H16 N5 O12 P3 S
sourceEscherichia coli
experimentX-ray (resolution=2.80, R-factor=?)
structural superfamilyP-loop containing nucleoside triphosphate hydrolases;RecA protein, C-terminal domain;
reference complex8trg_A
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
interface signatureSMRI/SMRKI

Estimated binding specificities ?

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# IC=7.099 IC/col=0.887 n_of_columns=8 specificity:   
A |  54  96  96  54  96  96  24   0
C |  13   0   0  13   0   0  24  96
G |  13   0   0  13   0   0  24   0
T |  16   0   0  16   0   0  24   0
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updated Wed Jan 7 01:12:22 2026