7kbd_C : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	NUCLEOSOME IN INTERPHASE CHROMOSOME FORMED IN XENOPUS EGG EXTRACT (OLIGO FRACTION) (HISTONE H2A)
source	XENOPUS LAEVIS
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	7kbd_ABCDEFGH 7kbe_ABCDEFGH 7kbf_ABCDEFGHK
redundant complexes	7kbe 7kbf
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7kbd_C interface=1,29, KasrsakaglqfpvgrihrllrkgnyavRigsgsaiylaatleylcaevlelagnaardnkklrimprhiqlavrnddelaklfegvtiadggvlpniqsallp

  
  RT----                                  +8smw_G    
                           +--------------1 
  RG----                   !              +8ox0_C    
                         +-6 
  RG----                 ! !              +8txv_G    
                      +--7 +--------------2 
  RG----              !  !                +5x0y_G    
               +------8  ! 
  RG----       !      !  +--------------8jla_C    
               !      ! 
  RA--RA       !      +-----------------6a5l_g    
               !  
  RA----     -11              +----------1zla_C    
               !      +-------4 
  RT----       !      !       +----------8hr1_E    
               !    +-9 
  RG--RG       !    ! !            +-----8kcb_A    
               !    ! +------------3 
  --RA--       +---10              +-----6g0l_D    
                    !  
  RT----            !       +-----------8u14_G    
                    +-------5 
  RT----                    +-----------8grq_A

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updated Wed Dec 18 09:29:56 2024