7kbd_C : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	NUCLEOSOME IN INTERPHASE CHROMOSOME FORMED IN XENOPUS EGG EXTRACT (OLIGO FRACTION) (HISTONE H2A)
source	XENOPUS LAEVIS
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	7kbd_ABCDEFGH 7kbe_ABCDEFGH 7kbf_ABCDEFGHK
redundant complexes	7kbe 7kbf
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7kbd_C interface=1,29, KasrsakaglqfpvgrihrllrkgnyavRigsgsaiylaatleylcaevlelagnaardnkklrimprhiqlavrnddelaklfegvtiadggvlpniqsallp

  
  ----RARA                                +6a5l_g    
                           +--------------1 
  ----RG--                 !              +8upf_G    
                         +-5 
  ----RT--               ! !             +8u14_G    
                 +-------6 +-------------2 
  ----RC--       !       !               +7yqk_C    
                 !       ! 
  HGRTRG--       !       +--------------8rbx_V    
               --9 
  ----RG--       !          +-----------8txv_G    
                 !  +-------4 
  ----RC--       !  !       +-----------7ux9_E    
                 +--8 
  ----RGRG          !             +------8kcb_A    
                    ! +-----------3 
  ----RA--          +-7           +------7e9c_F    
                      ! 
  ----RT--            +------------------6px1_A

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updated Sat Jan 10 15:36:04 2026