Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameNUCLEOSOME IN INTERPHASE CHROMOSOME FORMED IN XENOPUS EGG EXTRACT (OLIGO FRACTION)
(HISTONE H2A)
sourceXENOPUS LAEVIS
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes7kbd_ABCDEFGH 7kbe_ABCDEFGH 7kbf_ABCDEFGHK
redundant complexes7kbe 7kbf
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  RT--           +-----------------------------8u14_G    
               +-1 
  RG--       +-2 +-----------------------------8txv_G    
             ! ! 
  RGRG     --3 +-----------------------------8kcb_A    
             ! 
  RT--       +-----------------------------8smw_G

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updated Sat Sep 14 02:58:45 2024