7kbd_C : 3D-footprint complex

Interface of input file ?

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.

Dendrogram of similar interfaces ?

matrix format

structure name	NUCLEOSOME IN INTERPHASE CHROMOSOME FORMED IN XENOPUS EGG EXTRACT (OLIGO FRACTION) (HISTONE H2A)
source	XENOPUS LAEVIS
experiment	NMR
structural superfamily	Histone-fold;
sequence family	Core histone H2A/H2B/H3/H4;
multimeric complexes	7kbd_ABCDEFGH 7kbe_ABCDEFGH 7kbf_ABCDEFGHK
redundant complexes	7kbe 7kbf
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7kbd_C interface=1,29, KasrsakaglqfpvgrihrllrkgnyavRigsgsaiylaatleylcaevlelagnaardnkklrimprhiqlavrnddelaklfegvtiadggvlpniqsallp

  
  RA----                               +1zla_C    
                         +-------------4 
  RA--RA                 !             +6a5l_g    
                         ! 
  RG----            +----7                +8txv_G    
                    !    ! +--------------1 
  RG----            !    ! !              +5x0y_G    
                    !    +-6 
  RT----          +-9      !              +8u14_G    
                  ! !      +--------------2 
  RG----          ! !                     +8ox0_C    
                  ! ! 
  RT----       +-10 !                   +8smw_G    
               !  ! +-------------------3 
  RG----       !  !                     +8jla_C    
               !  !  
  RT----     -11  +--------------------8grq_A    
               !  
  RG--RG       !               +------8kcb_A    
               !   +-----------5 
  --RA--       +---8           +------6g0l_D    
                   ! 
  RT----           +------------------8hr1_E

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updated Sun Aug 3 16:51:05 2025