7khc_ABF : 3D-footprint complex

structure name	ESCHERICHIA COLI RNA POLYMERASE AND RRNBP1 PROMOTER CLOSED COMPLEX
source	ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12) / ESCHERICHIA COLI (STRAIN K12)
experiment	NMR
structural superfamily	Insert subdomain of RNA polymerase alpha subunit;C-terminal domain of RNA polymerase alpha subunit;RBP11-like subunits of RNA polymerase;
reference complex	3iyd_A 7c97_K 8y6u_I
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7khc_A interface=259,288, eflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspveriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrdvrqpevkeekpefdpillrpvddleltvRsanclkaeaihyigdlvqrtevellktpNlgkkslteikdvlasrglslg > 7khc_B interface=260, teflkprlvdieqvssthakvtleplergfghtlgnalrrillssmpgcavteveidgvlheystkegvqedileillnlkglavrvqgkdeviltlnksgigpvtaadithdgdveivkpqhvichltdenasismrikvqrgrgyvpastrihseederpigrllvdacyspveriaynveaarveqrtdldklviemetngtidpeeairraatilaeqleafvdlrdvrqpevkeekpefdpillrpvddleltvRsanclkaeaihyigdlvqrtevellktpnlgkkslteikdvlasrglslgmrlenw > 7khc_F interface=260,268,409,419,420,421,423, geidiakriedginqvqcsvaeypeaitylleqydrveaeearlsdlitgfvddpelarekfaelraqyvvtrdtikataqeeilklsevfkqfrlvpkqfdylvnsmrvmmdrvrtqerlimklcveqckmpkknfitlftgnetsdtwfnaaiamnkpwseklhdvseevhralqklqqieeetgltieqvkdinrrmsigeakarrakkemveanlrlvisiakkytnrglqfldliqegniglmkavdkfeyrrgYkfstyatWwirqaitrsiadqartiripvhmietinklnrisrqmlqemgreptpeelaermlmpedkirkvlkiakepismetpigddedshlgdfiedttlelpldsatteslraathdvlagltareakvlrmrfgidmntdytlEevgkqfdvtRERiRqieakalrklrhpsrsevlrsfld
interface signature	RN/R/YWERERR

Estimated binding specificities ?

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# IC=6.150 IC/col=0.308 n_of_columns=20

specificity:

A |   9  96   0  82  61   0  24  24  24  24  24  24  24  24  24  24  24  24  24   6
C |   6   0  96   6  13   0  24  24  24  24  24  24  24  24  24  24  24  24  24  16
G |  75   0   0   8   6  96  24  24  24  24  24  24  24  24  24  24  24  24  24  13
T |   6   0   0   0  16   0  24  24  24  24  24  24  24  24  24  24  24  24  24  61

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updated Sun Dec 15 07:14:36 2024