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interface graphfootprint logointerface matrixatomic interactionsinterface residue numbers

3D-footprint cannot reliably estimate the specificity of 'Nucleic acid-binding proteins', as they bind to single-stranded DNA and thus accumulate more base contacts.

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updated Mon Dec 18 20:49:45 2023

structure name	HUMAN DNA LIGASE 1 - R641L NICKED DNA COMPLEX (DNA ligase 1)
reference	Schellenberg et al. 'Nucleic 49 1619 2021
source	Homo sapiens
experiment	X-ray (resolution=1.90, R-factor=0.170)
structural superfamily	ATP-dependent DNA ligase DNA-binding domain;DNA ligase/mRNA capping enzyme, catalytic domain;Nucleic acid-binding proteins;
sequence family	ATP dependent DNA ligase domain; DNA ligase N terminus; ATP dependent DNA ligase C terminal re;
reference complex	6p0c_A
links to other resources	NAKB PDIdb DNAproDB
protein sequence	> 7l34_A interface=46,283,372,507,508,535,608,609, sndpsgynpaknnyhpvedacwkpgqkvpylavartfekieevsaRlrmvetlsnllrsvvalsppdllpvlylslnhlgppqqglelgvgdgvllkavaqatgrqlesvraeaaekgdvglvaensrlmlppppltasgvfskfrdiarltgsastakkidiikglfvacrhsearfiarslsgrlrlglaeqsvlaalsqavsltppgqefppamvdagkgktaearktwleeqgmilkqtfcevpdldriipvllehglerlpehcklspgiplkpmlaHptrgisevlkrfeeaaftceykydgqraqihaleggevkifsrnqedntgkypdiisripkiklpsvtsfildteavawdrekkqiqpFqvlttlkrkevdaseiqvqvclyafdliylngeslvreplsrrrqllrenfvetegefvfatsldtkdieqiaefleqsvkdsceglmvktldvdatyeiakrshnwlklkkdyldgvgdtldlvvigaylgrgKRagryggfllasydedseelqaicklgTgfsdeeleehhqslkalvlpsprpyvridgavipdhwldpsavwevkcadlslspiypaarglvdsdkgislRFprfirvredkqpeqattsaqvaclyrkq