Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameMARSEILLEVIRUS HETEROTRIMERIC (HEXAMERIC) NUCLEOSOME
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes7lv8_ABCDEFGH 7lv9_ABCDEF
redundant complexes7lv8
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  ----RG                              +------7uv9_E    
                               +------3 
  ----RA                       !      !   +--7xsx_a    
                           +---4      +---2 
  ----RC                   !   !          +--6qld_f    
                      +----5   ! 
  --LT--              !    !   +-------------7ywx_E    
                      !    ! 
  ----RT           +--6    +-----------------8cww_A    
                   !  ! 
  --LTRC           !  !                      +3kwq_E    
                 +-7  +----------------------1 
  --LGRA   L     ! !                         +8he5_a    
               +-8 ! 
  YG--RT       ! ! +-------------------------8siy_G    
             --9 ! 
  --LC--       ! +--------------------------8bvw_e    
               ! 
  --LARG       +--------------------------7unc_a    
             

home
updated Tue Dec 19 18:51:33 2023