Interface of input file ?

interface graph
legend  pdf

footprint
legend

3D-footprint cannot reliably estimate the specificity of histones, as they display few contacts over long stretches of DNA.


Dendrogram of similar interfaces ?

matrix format
structure nameMARSEILLEVIRUS HETEROTRIMERIC (HEXAMERIC) NUCLEOSOME
experimentNMR
structural superfamilyHistone-fold;
sequence familyCore histone H2A/H2B/H3/H4;
multimeric complexes7lv8_ABCDEFGH 7lv9_ABCDEF
redundant complexes7lv8
links to other resourcesNAKB PDBSum PDIdb DNAproDB
protein sequence
  
  LCRT----       +-----------------------------8hr1_E    
                 !  
  LARG----       !                              +7unc_a    
                 !          +-------------------1 
  --RT----       !       +-11                   +8grq_A    
                 !       !  !  
  --RA--RA     -13       !  +-------------------6a5l_g    
                 !       !  
  LC------       !       !             +-------8bvw_e    
                 !       !       +-----7 
  --RA----       !       !       !     !    +--7xsx_a    
                 !       !       !     +----6 
  ----RA--       +------12       !          +--6g0l_D    
                         !       ! 
  --RC----               !    +--9            +6qld_f    
                         !    !  !            ! 
  --RT----               !    !  !     +------5   +8u14_G    
                         !    !  !     !      ! +-2 
  --RA----               !    !  !     !      +-3 +1zla_C    
                         +---10  +-----8        ! 
  --RG----                    !        !        +8ox0_C    
                              !        ! 
  --RG----                    !        +-------5x0y_G    
                              !  
  --RG----                    !                +8txv_G    
                              +----------------4 
  --RG----                                     +8jla_C    
               

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updated Wed Dec 18 09:38:12 2024